INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <DOI:10.1186/s13073-016-0319-7>.

Install the latest version of this package by entering the following in R:
install.packages("INSPIRE")
AuthorSafiye Celik
Date of publication2016-12-09 22:52:45
MaintainerSafiye Celik <safiye@cs.washington.edu>
LicenseGPL (>= 2)
Version1.5
inspire.cs.washington.edu

View on CRAN

Files

src
src/INSPIRE.c
NAMESPACE
data
data/two_example_datasets.rda
data/datalist
R
R/INSPIRE.R
MD5
DESCRIPTION
man
man/exmp_dataset1.Rd man/exmp_dataset2.Rd man/INSPIRE.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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