INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets
Version 1.5

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) .

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AuthorSafiye Celik
Date of publication2016-12-09 22:52:45
MaintainerSafiye Celik <safiye@cs.washington.edu>
LicenseGPL (>= 2)
Version1.5
URL inspire.cs.washington.edu
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("INSPIRE")

Man pages

exmp_dataset1: Example Gene Expression Dataset-1
exmp_dataset2: Example Gene Expression Dataset-2
INSPIRE: Inferring Shared Modules from Multiple Gene Expression...

Functions

INSPIRE Man page Source code
exmp_dataset1 Man page
exmp_dataset2 Man page

Files

src
src/INSPIRE.c
NAMESPACE
data
data/two_example_datasets.rda
data/datalist
R
R/INSPIRE.R
MD5
DESCRIPTION
man
man/exmp_dataset1.Rd
man/exmp_dataset2.Rd
man/INSPIRE.Rd
INSPIRE documentation built on May 19, 2017, 10:48 p.m.