INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <DOI:10.1186/s13073-016-0319-7>.

Getting started

Package details

AuthorSafiye Celik
MaintainerSafiye Celik <[email protected]>
LicenseGPL (>= 2)
Version1.5
URL inspire.cs.washington.edu
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("INSPIRE")

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INSPIRE documentation built on May 2, 2019, 9:34 a.m.