INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <DOI:10.1186/s13073-016-0319-7>.

Author
Safiye Celik
Date of publication
2016-09-20 23:39:52
Maintainer
Safiye Celik <safiye@cs.washington.edu>
License
GPL (>= 2)
Version
1.3
URLs

View on CRAN

Man pages

exmp_dataset1
Example Gene Expression Dataset-1
exmp_dataset2
Example Gene Expression Dataset-2
INSPIRE
Inferring Shared Modules from Multiple Gene Expression...

Files in this package

INSPIRE
INSPIRE/src
INSPIRE/src/INSPIRE.c
INSPIRE/NAMESPACE
INSPIRE/data
INSPIRE/data/two_example_datasets.rda
INSPIRE/data/datalist
INSPIRE/R
INSPIRE/R/INSPIRE.R
INSPIRE/MD5
INSPIRE/DESCRIPTION
INSPIRE/man
INSPIRE/man/exmp_dataset1.Rd
INSPIRE/man/exmp_dataset2.Rd
INSPIRE/man/INSPIRE.Rd