plot.analyseISE: Plot function for ion selective electrode characterisation...

In ISEtools: Ion Selective Electrodes Analysis Methods

Plot function for ion selective electrode characterisation and estimation of sample concentrations

Description

Plots sample concentration estimates derived from Bayesian calibration. E.g. analyseISE uses Bayesian calibration to estimate parameters for y = a + b log(x + c) + error, where error follows a normal distribution with mean 0 and standard deviation sigma. These valus are combined with experimental data to estimate sample concentrations.

Usage

## S3 method for class 'analyseISE'
plot(x, xlab = "Sample ID",
  ylab = expression(paste(log[10], " { ", italic(x), " }")), xlim = NA,
  ylim = c(-15, 0), x.ticks = NA, y.ticks = NA, x.ticks.label = TRUE,
  y.ticks.label = TRUE, y.las = 2, col = 1, x.shift = 0, xaxs = "r",
  yaxs = "r", add.box = TRUE, ...)

Arguments

x	Calibration and experimental sample results (of class 'analyseISE'; see analyseISE)
xlab	Label for the x-axis
ylab	Label for the y-axis
xlim	Limits for the x-axis. Automatically calculated if xlim = NA.
ylim	Limits for the y-axis.
x.ticks	Location of tickmarks for the x-axis. Automatically calculated if x.ticks = NA.
y.ticks	Location of tickmarks for the y-axis. Automatically calculated if y.ticks = NA.
x.ticks.label	Labels associated with x-axis tickmarks for the x-axis. Automatically calculated labels (TRUE), no labels (FALSE), or a column of text specifying custom labels (e.g. x.ticks.label = c("A", "B", "C") or similar, of the same length as x.ticks).
y.ticks.label	Labels associated with y-axis tickmarks for the y-axis. See x.ticks.label for details.
y.las	Indicates whether y-axis labels be perpendicular to the y-axis (2) or parallel to it (0).
col	Colour for the field of the plot.
x.shift	Shifts the plots to the left (- values) or right (+ values); useful for overlaying figures.
xaxs	The style of x-axis interval. See par for further details, but "r" adds 4 percent padding, "i" has no padding.
yaxs	The style of y-axis interval. See xaxs above.
add.box	Indicates whether a box should be drawn around the plot (TRUE) or not (FALSE).
...	Other arguments to be passed through to plotting functions.

Value

No return value, creates plot.

Author(s)

Peter Dillingham, [e-mail]

See Also

analyseISE

ISEtools documentation built on Oct. 19, 2022, 5:29 p.m.