Files in IncidencePrevalence
Estimate Incidence and Prevalence using the OMOP Common Data Model
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/estimatePrevalence.R
R/tidyResults.R
R/getStudyDays.R
R/generateDenominatorCohortSet.R
R/plotting.R
R/getPrevalence.R
R/utils-pipe.R
R/estimateIncidence.R
R/data.R
R/reexport-omopgenerics.R
R/getIncidence.R
R/inputValidation.R
R/dateUtilities.R
R/mockIncidencePrevalence.R
R/incidencePrevalence-package.R
R/tables.R
R/getDenominatorCohorts.R
R/recordAttrition.R
R/benchmarkIncidencePrevalence.R
inst/CITATION
inst/WORDLIST
inst/doc/a07_benchmark.R
inst/doc/a06_Working_with_IncidencePrevalence_Results.R
inst/doc/a01_Introduction_to_IncidencePrevalence.Rmd
inst/doc/a04_Calculating_prevalence.html
inst/doc/a01_Introduction_to_IncidencePrevalence.html
inst/doc/a06_Working_with_IncidencePrevalence_Results.html
inst/doc/a06_Working_with_IncidencePrevalence_Results.Rmd
inst/doc/a04_Calculating_prevalence.Rmd
inst/doc/a05_Calculating_incidence.html
inst/doc/a03_Creating_target_denominator_populations.Rmd
inst/doc/a04_Calculating_prevalence.R
inst/doc/a07_benchmark.Rmd
inst/doc/a02_Creating_denominator_populations.Rmd
inst/doc/a03_Creating_target_denominator_populations.R
inst/doc/a02_Creating_denominator_populations.html
inst/doc/a05_Calculating_incidence.R
inst/doc/a03_Creating_target_denominator_populations.html
inst/doc/a07_benchmark.html
inst/doc/a05_Calculating_incidence.Rmd
inst/doc/a01_Introduction_to_IncidencePrevalence.R
inst/doc/a02_Creating_denominator_populations.R
build/vignette.rds
tests/testthat.R
tests/manual/test-dbms.R
tests/manual/README.md
tests/manual/test-eunomia.R
tests/testthat/test-tables.R
tests/testthat/test-generateDenominatorCohortSet.R
tests/testthat/test-plotting.R
tests/testthat/test-benchmarkIncidencePrevalence.R
tests/testthat/test-getStudyDays.R
tests/testthat/test-estimatePrevalence.R
tests/testthat/test-tidyResults.R
tests/testthat/test-mockIncidencePrevalence.R
tests/testthat/test-dateUtilities.R
tests/testthat/test-estimateIncidence.R
tests/testthat/test_should_fail/test_database_result_1_2023_10_17.csv
tests/testthat/test_should_fail/test_database_result_1_2023_12_08.csv
tests/testthat/test_should_fail/mock_result_1_2024_02_04.csv
tests/testthat/test_should_fail/test_database_result_1_2023_10_04.csv
vignettes/inc_no_rep_some_washout.png
vignettes/mock_db_fig2.png
vignettes/period_prev.png
vignettes/a01_Introduction_to_IncidencePrevalence.Rmd
vignettes/mock_db_fig1.png
vignettes/denominator_pop_inclusion_fig1.png
vignettes/numerator_pop_fig1.png
vignettes/inc_rep_some_washout.png
vignettes/denominator_pop_inclusion_fig2.png
vignettes/denominator_pop_inclusion_fig3.png
vignettes/a06_Working_with_IncidencePrevalence_Results.Rmd
vignettes/numerator_pop_fig2.png
vignettes/a04_Calculating_prevalence.Rmd
vignettes/a06_Plotting_options.R
vignettes/dpop1.png
vignettes/a03_Creating_target_denominator_populations.Rmd
vignettes/dpop2.png
vignettes/numerator_pop_fig3.png
vignettes/inc_no_rep_washout_all.png
vignettes/a07_benchmark.Rmd
vignettes/a02_Creating_denominator_populations.Rmd
vignettes/point_prev.png
vignettes/inc_no_rep_no_washout.png
vignettes/a05_Calculating_incidence.Rmd
vignettes/inc_rep_some_washout_censor.png
vignettes/mock_db_fig3.png
vignettes/dpop3.png
vignettes/dpop4.png
data/IncidencePrevalenceBenchmarkResults.rda
man/estimatePeriodPrevalence.Rd
man/tableIncidenceAttrition.Rd
man/estimateIncidence.Rd
man/estimatePointPrevalence.Rd
man/benchmarkIncidencePrevalence.Rd
man/reexports.Rd
man/IncidencePrevalenceBenchmarkResults.Rd
man/IncidencePrevalence-package.Rd
man/generateDenominatorCohortSet.Rd
man/generateTargetDenominatorCohortSet.Rd
man/mockIncidencePrevalence.Rd
man/plotPrevalence.Rd
man/plotIncidence.Rd
man/optionsTablePrevalence.Rd
man/plotPrevalencePopulation.Rd
man/availablePrevalenceGrouping.Rd
man/tablePrevalence.Rd
man/asIncidenceResult.Rd
man/tableIncidence.Rd
man/pipe.Rd
man/plotIncidencePopulation.Rd
man/optionsTableIncidence.Rd
man/tablePrevalenceAttrition.Rd
man/asPrevalenceResult.Rd
man/availableIncidenceGrouping.Rd
man/figures/README-unnamed-chunk-13-1.png
man/figures/logo.png
man/figures/README-unnamed-chunk-11-1.png
man/figures/README-unnamed-chunk-12-1.png
