plot1gene: plot1gene

In IntegratedJM: Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature

Description

The plot1gene function plots the data for a single gene.

Usage

plot1gene(geneName, fp, fpName = "", responseVector, dat, resPlot = TRUE,
  colP = "blue", colA = "white")

Arguments

geneName	Character string, specifying the name of the gene.
fp	Vector containing 0's and 1's - the data about the fingerprint feature.
fpName	Character string, used to make the title of the plots. If not specified, the plot title will be blank.
responseVector	Vector containing the bio-activity data.
dat	Contains the gene expression data matrix for all the genes - can be a matrix or an expression set.
resPlot	Logical. If TRUE, also plots the residual from the gls fit. Default is TRUE.
colP	Character string, specifying the colour for the 1's in the fp parameter. Default is blue.
colA	Character string, specifying the colour for the 0's in the fp parameter. Default is white.

Details

Calls the getCorrUnad function and creates the plot(s) accordingly.

Value

Creates a plot

Examples

## Not run: 
plot1gene(geneName="Gene21",fp=fp,fpName="Fingerprint",responseVector=activity,dat=gene_eset)

## End(Not run)

IntegratedJM documentation built on May 2, 2019, 2:44 p.m.