IsotopeR: Stable Isotope Mixing Model

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Estimates diet contributions from isotopic sources using JAGS. Includes estimation of concentration dependence and measurement error.

Author
Jake Ferguson and Jack Hopkins
Date of publication
2016-06-15 18:03:02
Maintainer
Jake Ferguson <troutinthemilk@gmail.com>
License
GPL (>= 2)
Version
0.5.4

View on CRAN

Man pages

Bi.plots
Mixing Space, 2 sources
curves.plot
Curves Plot
IsotopeR
IsotopeR
IsotopeRfull
Full JAGS IsotopeR Model
IsotopeRfullgroup
Full JAGS IsotopeR Model
IsotopeRfullnoind
Full JAGS IsotopeR Model
IsotopeRnoconc
No Concentration Dependence Model
IsotopeRnoconcgroup
No Concentration Dependence Model
IsotopeRnoconcnodiscrim
No Concentration Dependence or Discrimination Error Model
IsotopeRnoconcnodiscrimgroup
No Concentration Dependence or Discrimination Error Model
IsotopeRnoconcnoind
No Concentration Dependence Model
IsotopeRnoconcnome
No Concentration Dependence or Measurement Error Model
IsotopeRnoconcnomegroup
No Concentration Dependence or Measurement Error Model
IsotopeRnoconcnomenodiscrim
No Concentration Dependence, Measurement Error or...
IsotopeRnoconcnomenodiscrimgroup
No Concentration Dependence, Measurement Error or...
IsotopeRnoconcnomenoind
No Concentration Dependence or Measurement Error Model
IsotopeRnodiscrim
No Discriminination Error Model
IsotopeRnodiscrimgroup
No Discriminination Error Model
IsotopeRnome
No Measurement Error Model
IsotopeRnomegroup
No Measurement Error Model
IsotopeRnomenodiscrim
No Measurement Error or Discrimination Error Model
IsotopeRnomenodiscrimgroup
No Measurement Error or Discrimination Error Model
IsotopeRnomenoind
No Measurement Error Model
IsotopeR-package
IsotopeR package
IsoWrapper
IsoWrapper
load.prev.func
load.prev.func
RGL.plots
Mixing Space, 3 isotopes
Tri.plots
Mixing Space, 3 sources

Files in this package

IsotopeR
IsotopeR/inst
IsotopeR/inst/doc
IsotopeR/inst/doc/IsotopeR.Rnw
IsotopeR/inst/doc/IsotopeR.pdf
IsotopeR/NAMESPACE
IsotopeR/NEWS
IsotopeR/R
IsotopeR/R/Data_Example
IsotopeR/R/Data_Example/MeasurementError.csv
IsotopeR/R/Data_Example/Digest.csv
IsotopeR/R/Data_Example/Mixtures.csv
IsotopeR/R/Data_Example/DiscrimSD.csv
IsotopeR/R/Data_Example/Data_Example.zip
IsotopeR/R/Data_Example/SourceCD.csv
IsotopeR/R/Data_Example/Sources.csv
IsotopeR/R/IsotopeRgui.R
IsotopeR/R/IsotopeRModelsNoGroups.R
IsotopeR/R/IsotopeRModelsGroups.R
IsotopeR/R/IsotopeRModelsNoGroupsNoInd.R
IsotopeR/R/Plot_jags.R
IsotopeR/vignettes
IsotopeR/vignettes/Figures
IsotopeR/vignettes/Figures/Fig3.png
IsotopeR/vignettes/Figures/Fig21.png
IsotopeR/vignettes/Figures/Fig16.png
IsotopeR/vignettes/Figures/Fig13.png
IsotopeR/vignettes/Figures/Fig9.png
IsotopeR/vignettes/Figures/PanelFig1.png
IsotopeR/vignettes/Figures/Fig7.png
IsotopeR/vignettes/Figures/Fig4.png
IsotopeR/vignettes/Figures/cover.pdf
IsotopeR/vignettes/Figures/Fig10.png
IsotopeR/vignettes/Figures/Fig12.png
IsotopeR/vignettes/Figures/Fig5.png
IsotopeR/vignettes/Figures/Fig6.png
IsotopeR/vignettes/Figures/PanelFig2.png
IsotopeR/vignettes/Figures/Fig23.png
IsotopeR/vignettes/Figures/Fig15.png
IsotopeR/vignettes/Figures/Fig17.png
IsotopeR/vignettes/Figures/Fig2.png
IsotopeR/vignettes/Figures/Fig14.png
IsotopeR/vignettes/Figures/Fig24.png
IsotopeR/vignettes/Figures/cover.png
IsotopeR/vignettes/Figures/Fig18.png
IsotopeR/vignettes/Figures/Fig8.png
IsotopeR/vignettes/Figures/PanelFig3.png
IsotopeR/vignettes/Figures/Fig11.png
IsotopeR/vignettes/Figures/Fig20.png
IsotopeR/vignettes/Figures/Fig1.png
IsotopeR/vignettes/Figures/Fig19.png
IsotopeR/vignettes/Figures/Fig22.png
IsotopeR/vignettes/IsotopeR.Rnw
IsotopeR/MD5
IsotopeR/build
IsotopeR/build/vignette.rds
IsotopeR/DESCRIPTION
IsotopeR/man
IsotopeR/man/IsotopeRnoconcnome.Rd
IsotopeR/man/load.prev.func.Rd
IsotopeR/man/IsotopeRnomenodiscrimgroup.Rd
IsotopeR/man/IsotopeRfullgroup.Rd
IsotopeR/man/IsotopeRnomenodiscrim.Rd
IsotopeR/man/IsotopeRnome.Rd
IsotopeR/man/IsotopeRnoconcnomenoind.Rd
IsotopeR/man/IsotopeRnoconcnomegroup.Rd
IsotopeR/man/RGL.plots.Rd
IsotopeR/man/IsotopeRnoconcnodiscrim.Rd
IsotopeR/man/IsotopeRnoconc.Rd
IsotopeR/man/IsoWrapper.Rd
IsotopeR/man/IsotopeRnodiscrim.Rd
IsotopeR/man/IsotopeRnoconcnomenodiscrim.Rd
IsotopeR/man/IsotopeRnomegroup.Rd
IsotopeR/man/IsotopeRnoconcgroup.Rd
IsotopeR/man/IsotopeR-package.Rd
IsotopeR/man/IsotopeRnoconcnoind.Rd
IsotopeR/man/IsotopeRnoconcnodiscrimgroup.Rd
IsotopeR/man/Bi.plots.Rd
IsotopeR/man/curves.plot.Rd
IsotopeR/man/IsotopeRfullnoind.Rd
IsotopeR/man/IsotopeRnomenoind.Rd
IsotopeR/man/Tri.plots.Rd
IsotopeR/man/IsotopeRfull.Rd
IsotopeR/man/IsotopeRnoconcnomenodiscrimgroup.Rd
IsotopeR/man/IsotopeR.Rd
IsotopeR/man/IsotopeRnodiscrimgroup.Rd