KMDA: Kernel-Based Metabolite Differential Analysis

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Compute p-values of metabolite differential expression analysis using the kernel-based approach.

Author
Xiang Zhan and Debashis Ghosh
Date of publication
2015-04-01 07:48:17
Maintainer
Xiang Zhan <xiangzhan9@gmail.com>
License
GNU General Public License
Version
1.0

View on CRAN

Man pages

dkernel
Distance-based Kernel
dscore
Distance-based Kernel Score Test
hcc
Metabolomic Study on Hepatocellular Carcinoma (HCC)
invlogit
Inverse Logit Function
KMDA-package
Kernel-Based Metabolomic Differential Analysis
mdist
Metabolite Distance Metric
pearson.group
Grouping Based on Pearson Correlation Coefficients
skernel
Stratified Kernel
spearman.group
Grouping Based on Spearman Correlation Coefficients
sscore
Distance-based Kernel Score Test
tr
Trace of A Matrix

Files in this package

KMDA
KMDA/NAMESPACE
KMDA/data
KMDA/data/hcc.rda
KMDA/R
KMDA/R/dscore.R
KMDA/R/sscore.R
KMDA/R/mdist.R
KMDA/R/skernel.R
KMDA/R/invlogit.R
KMDA/R/pearson.group.R
KMDA/R/tr.R
KMDA/R/dkernel.R
KMDA/R/spearman.group.R
KMDA/MD5
KMDA/DESCRIPTION
KMDA/man
KMDA/man/spearman.group.Rd
KMDA/man/dkernel.Rd
KMDA/man/hcc.Rd
KMDA/man/invlogit.Rd
KMDA/man/KMDA-package.Rd
KMDA/man/sscore.Rd
KMDA/man/skernel.Rd
KMDA/man/pearson.group.Rd
KMDA/man/mdist.Rd
KMDA/man/tr.Rd
KMDA/man/dscore.Rd