kog.mwut: Mann-Whitney U test for KOG enrichment.
In KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data
Description
Usage
Arguments
Value
Author(s)
References
Description
Accessory function to kog.mwu()
Usage
1
kog.mwut(gos, Alternative = "t")
Arguments
gos
A dataframe with three columns, 'seq' (gene id),'term' (KOG class) and 'value' (continuous measure, such as log fold-change).
Alternative
Tailedness of the MWU test: two-tailed ("t"), greater-than ("g"), or less-than ("l")
Value
A dataframe with three columns: 'term', 'nseqs', 'delta.rank', 'pval' and 'padj'
Author(s)
Mikhail V. Matz
References
Dixon GB, Davies SW, Aglyamova GA, Meyer E, Bay LK and Matz MV (2015) Genomic determinants of coral heat tolerance across latitudes.
KOGMWU documentation built on May 2, 2019, 4 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) References
Description
Accessory function to kog.mwu()
Usage
1 | kog.mwut(gos, Alternative = "t")
|
Arguments
gos |
A dataframe with three columns, 'seq' (gene id),'term' (KOG class) and 'value' (continuous measure, such as log fold-change). |
Alternative |
Tailedness of the MWU test: two-tailed ("t"), greater-than ("g"), or less-than ("l") |
Value
A dataframe with three columns: 'term', 'nseqs', 'delta.rank', 'pval' and 'padj'
Author(s)
Mikhail V. Matz
References
Dixon GB, Davies SW, Aglyamova GA, Meyer E, Bay LK and Matz MV (2015) Genomic determinants of coral heat tolerance across latitudes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.