KRIS-package: Keen and Reliable Interface Subroutines for bioinformatic...

In KRIS: Keen and Reliable Interface Subroutines for Bioinformatic Analysis

Description

Provides useful functions which are needed for bioinformatic analysis such as calculating linear principal components from numeric data and Single-nucleotide polymorphism (SNP) dataset, calculating fixation index (Fst) using Hudson method, creating scatter plots in 3 views, handling with PLINK binary file format, detecting rough structures and outliers using unsupervised clustering, and calculating matrix multiplication in the faster way for big data.

Details

The R package KRIS requires the package rARPACK.

Here is the list of functions in the R package KRIS:

• cal.pc.linear

• cal.pc.projection

• fst.each.snp.hudson

• fst.hudson

• plot3views

• read.bed

• rubikclust

• write.bed

• xxt

Moreover, here is the list of example datasets in the R package KRIS:

• simsnp

• sample_labels

Author(s)

Maintainer: Kridsadakorn Chaichoompu [e-mail]

Authors:

• Kristel Van Steen

• Fentaw Abegaz

• Sissades Tongsima

• Philip James Shaw

• Anavaj Sakuntabhai

• Luisa Pereira

See Also

Useful links:

• https://gitlab.com/kris.ccp/kris

• Report bugs at https://gitlab.com/kris.ccp/kris/-/issues

KRIS documentation built on Jan. 21, 2021, 5:08 p.m.