R/KSEA.Scores.2.R

In KSEAapp: Kinase-Substrate Enrichment Analysis

#' One of the 3 datasets for heatmap plotting
#' 
#' A sample KSEA.Scores output generated from the KSEA.Scores() function 
#' (or alternatively, the "KSEA Kinase Scores.csv" output from the KSEA.Complete() function, loaded into R)
#' 
#' @name KSEA.Scores.2
#' 
#' @docType data
#' 
#' @format dataframe containing 7 columns in the exact order as listed below.
#'             \itemize{
#'                 \item{"KinaseGene"}{ the HUGO gene name of the kinase}
#'                 \item{"mS"} {the mean log2FC of all the kinase's identified substrates}
#'                 \item{"Enrichment"}{ the enrichment score (refer to Casado et al. (2013) Sci. Signal., 6, rs6-rs6)}
#'                 \item{"m"}{ the number of experimentally-identifed substrates annotating to that kinase}
#'                 \item{"z.score"}{ the normalized kinase score}
#'                 \item{"p.value"}{ the statistical assessment of the kinase score}
#'                 \item{"FDR"}{ the p-value adjusted for multiple hypothesis testing by the Benjamin-Hochberg method}
#'              }
#' 
#' @usage data(KSEA.Scores.2)
#' 
#' @references unpublished data
#' 
#' @keywords datasets
"KSEA.Scores.2"