Man pages for KinMixLite
Inference About Relationships from DNA Mixtures

add.child.meiosis.nodesReplace CPTs for mixture contributor a Father, given Child...
add.motherchild.likd.nodeReplace CPTs for mixture contributor a Father, given Child...
add.relative.likd.nodeReplace CPTs for mixture contributor a Father, given Child...
as.gtExtract genotype profile for a single contributor from rGTs...
checkpeaksCheck and modify database to have positive frequencies for...
convertIBDConvert relationship information to IBD pattern distribution
delete.DQnodesDelete D and Q dummy nodes from all Bayes nets in mixture
emperorsIBD pattern distribution in the Iulius-Claudius pedigree
expr.make.findingsCoding additional findings as expression
formatsFormats
gt2acaConverts genotype profiles to allele count arrays
intoMixEdit output from rGTs to omit individuals with NA amounts of...
KinMixLite-packageInference About Relationships from DNA Mixtures
logL.UKXEvaluates mixture log likelihood for unknown contributors...
logLXEvaluates mixture log likelihood when extra findings present
loop.rpt.IBDAnalysis of DNA mixtures with familial relationships by...
make.profileConvert genotype profile to reference profile format
mixMLXMaximises mixture likelihood when extra findings present
pedigreeIBDConstruct IBD pattern distribution from pedigree
plot.IBDPlot IBD patterns and pattern distributions
protectedCatch numerical errors, and return -Inf
protected.mixMLProtect against numerical errors in maximum likelihood...
require.compiledForce compilation of all BNs in a DNA mixture model
rGTsSimulate random genotype profiles and DNA samples for related...
rniRandom number initialiser supporting spontaneous replication
rpt.AMELReplace CPTs for AMEL marker in a DNA mixture
rpt.IBDReplacing CPTs for selected mixture contributors with...
rpt.UAFReplace CPTs in a DNA mixture to model uncertain allele...
sizeCalculate and display total size of BN tables for a DNA...
test2dataSmall data set for demonstrating some capabilities of KinMix...
wlrComputes paternity LR using WLR method
KinMixLite documentation built on Oct. 9, 2024, 9:07 a.m.