export_network: Export ABC results to simple HTML network

In LBDiscover: Literature-Based Discovery Tools for Biomedical Research

Export ABC results to simple HTML network

Description

This function exports ABC results to a simple HTML file with a visualization. If the visNetwork package is available, it will use it for a more interactive visualization.

Usage

export_network(
  abc_results,
  output_file,
  top_n = 50,
  min_score = 0.1,
  open = TRUE
)

Arguments

abc_results	A data frame containing ABC results from apply_abc_model().
output_file	File path for the output HTML file. Must be specified by user.
top_n	Number of top results to visualize.
min_score	Minimum score threshold for including connections.
open	Logical. If TRUE, opens the HTML file after creation.

Value

The file path of the created HTML file (invisibly).

Examples

# Create sample ABC results
abc_results <- data.frame(
  a_term = rep("migraine", 3),
  b_term = c("serotonin", "dopamine", "noradrenaline"),
  c_term = c("sumatriptan", "ergotamine", "propranolol"),
  a_b_score = c(0.8, 0.7, 0.6),
  b_c_score = c(0.9, 0.8, 0.7),
  abc_score = c(0.72, 0.56, 0.42)
)

# Export to temporary file
temp_file <- file.path(tempdir(), "network.html")
export_network(abc_results, temp_file, open = FALSE)

# Clean up
unlink(temp_file)

LBDiscover documentation built on June 16, 2025, 5:09 p.m.