LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest

Provides access to the 'LDlink' API (<https://ldlink.nci.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.

Package details

AuthorTimothy A. Myers [aut, cre], Stephen J. Chanock [aut], Mitchell J. Machiela [aut]
MaintainerTimothy A. Myers <myersta@mail.nih.gov>
LicenseGPL (>= 2)
Version1.1.2
URL https://ldlink.nci.nih.gov
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("LDlinkR")

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LDlinkR documentation built on Feb. 20, 2021, 1:06 a.m.