LGRF: Set-Based Tests for Genetic Association in Longitudinal Studies
Version 1.0

Functions for the longitudinal genetic random field method (He et al., 2015, ) to test the association between a longitudinally measured quantitative outcome and a set of genetic variants in a gene/region.

Browse man pages Browse package API and functions Browse package files

AuthorZihuai He
Date of publication2015-09-13 09:22:48
MaintainerZihuai He <zihuai@umich.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LGRF")

Man pages

IBS_pseudo: Generate IBS pseudo variables
LGRF_example: Data example for LGRF
LGRF.SSD.All: LGRF tests for multiple regions/genes using SSD format files
LGRF.SSD.OneSet_SetIndex: LGRF tests for a single region/gene using SSD format files
null.LGRF: Fit the null model for longitudinal genetic random field...
test.LGRF: Test the association between an outcome variable and a...
test.MinP: Test the association between an outcome variable and a...

Functions

Check.near Source code
Check.same Source code
Get.sqrt Source code
IBS_pseudo Man page Source code
Impute Source code
LGRF.SSD.All Man page Source code
LGRF.SSD.OneSet_SetIndex Man page Source code
LGRF.example Man page
center Source code
effect.n Source code
null.LGRF Man page Source code
test.LGRF Man page Source code
test.MinP Man page Source code

Files

NAMESPACE
data
data/LGRF.example.rda
R
R/Main_SSD.R
R/LGRF.R
MD5
DESCRIPTION
man
man/IBS_pseudo.Rd
man/LGRF.SSD.All.Rd
man/null.LGRF.Rd
man/test.MinP.Rd
man/LGRF_example.Rd
man/LGRF.SSD.OneSet_SetIndex.Rd
man/test.LGRF.Rd
LGRF documentation built on May 20, 2017, 12:03 a.m.