LGRF: Set-Based Tests for Genetic Association in Longitudinal Studies

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Functions for the longitudinal genetic random field method (He et al., 2015, <doi:10.1111/biom.12310>) to test the association between a longitudinally measured quantitative outcome and a set of genetic variants in a gene/region.

Author
Zihuai He
Date of publication
2015-09-13 09:22:48
Maintainer
Zihuai He <zihuai@umich.edu>
License
GPL-3
Version
1.0

View on CRAN

Man pages

IBS_pseudo
Generate IBS pseudo variables
LGRF_example
Data example for LGRF
LGRF.SSD.All
LGRF tests for multiple regions/genes using SSD format files
LGRF.SSD.OneSet_SetIndex
LGRF tests for a single region/gene using SSD format files
null.LGRF
Fit the null model for longitudinal genetic random field...
test.LGRF
Test the association between an outcome variable and a...
test.MinP
Test the association between an outcome variable and a...

Files in this package

LGRF
LGRF/NAMESPACE
LGRF/data
LGRF/data/LGRF.example.rda
LGRF/R
LGRF/R/Main_SSD.R
LGRF/R/LGRF.R
LGRF/MD5
LGRF/DESCRIPTION
LGRF/man
LGRF/man/IBS_pseudo.Rd
LGRF/man/LGRF.SSD.All.Rd
LGRF/man/null.LGRF.Rd
LGRF/man/test.MinP.Rd
LGRF/man/LGRF_example.Rd
LGRF/man/LGRF.SSD.OneSet_SetIndex.Rd
LGRF/man/test.LGRF.Rd