This function carries out a generalized procrustes superimposition on all fully complete specimens and produces a consensus confirguration (using "Shapes" procGPA). Each incomplete specimen is then individually rotated and aligned with the consensus configuration based on any landmarks are available (using "Shapes" procOPA). Landmarks are returned in the same shape space as the original dataset. Both 2D and 3D coordinates can be accommodated.

1 | ```
align.missing(X, nlandmarks)
``` |

`X` |
A n* l X 2 (or 3) matrix of coordinate data, where n is the number of specimens and l is the number of landmarks. All landmarks from one specimen should be grouped together. |

`nlandmarks` |
The number of landmarks per specimen |

Returns and n*l X 2 (or 3) matrix of aligned landmarks

J. Arbour

Arbour, J. and Brown, C. 2014. Incomplete specimens in Geometric Morphometric Analyses. *Methods in Ecology and Evolution* 5(1):16-26.

1 2 3 4 5 6 7 8 9 10 11 12 |

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.