LPS: Linear Predictor Score, for Binary Inference from Multiple Continuous Variables

An implementation of the Linear Predictor Score approach, as initiated by Radmacher et al. (J Comput Biol 2001) and enhanced by Wright et al. (PNAS 2003) for gene expression signatures. Several tools for unsupervised clustering of gene expression data are also provided.

Author
Sylvain Mareschal
Date of publication
2015-02-16 06:49:28
Maintainer
Sylvain Mareschal <maressyl@gmail.com>
License
GPL (>= 3)
Version
1.0.10
URLs

View on CRAN

Man pages

clusterize
Hierarchical clustering heat maps
heat
Heatmap palette generation
heat.map
Enhanced heat map ploting
heat.scale
Plots a heat map color scale, for legend
LPS
Linear Predictor Score fitting
LPS.coeff
Linear Predictor Score coefficient computation
OVL
Overlap quantification for LPS object
plot.LPS
Plot method for LPS objects
predict.LPS
Predict method for LPS objects
rosenwald
Rosenwald et al. Lymphochip data
surv.colors
Produces visual representation of survival data
surv.scale
Plots a survival color scale, for legend

Files in this package

LPS
LPS/inst
LPS/inst/NEWS.Rd
LPS/NAMESPACE
LPS/data
LPS/data/rosenwald.rda
LPS/R
LPS/R/plot.LPS.r
LPS/R/surv.colors.r
LPS/R/predict.LPS.r
LPS/R/LPS.coeff.r
LPS/R/heat_tools.r
LPS/R/heat.r
LPS/R/LPS.form.r
LPS/R/OVL.r
LPS/R/var.formula.r
LPS/R/clusterize.r
LPS/R/heat.scale.r
LPS/R/LPS.r
LPS/R/surv.scale.r
LPS/R/heat.map.r
LPS/README.md
LPS/MD5
LPS/DESCRIPTION
LPS/man
LPS/man/surv.colors.Rd
LPS/man/heat.Rd
LPS/man/heat.scale.Rd
LPS/man/LPS.Rd
LPS/man/heat.map.Rd
LPS/man/plot.LPS.Rd
LPS/man/predict.LPS.Rd
LPS/man/rosenwald.Rd
LPS/man/OVL.Rd
LPS/man/LPS.coeff.Rd
LPS/man/clusterize.Rd
LPS/man/surv.scale.Rd