LPS: Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
Version 1.0.10

An implementation of the Linear Predictor Score approach, as initiated by Radmacher et al. (J Comput Biol 2001) and enhanced by Wright et al. (PNAS 2003) for gene expression signatures. Several tools for unsupervised clustering of gene expression data are also provided.

Browse man pages Browse package API and functions Browse package files

AuthorSylvain Mareschal
Date of publication2015-02-16 06:49:28
MaintainerSylvain Mareschal <maressyl@gmail.com>
LicenseGPL (>= 3)
Version1.0.10
URL http://bioinformatics.ovsa.fr/LPS
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LPS")

Man pages

clusterize: Hierarchical clustering heat maps
heat: Heatmap palette generation
heat.map: Enhanced heat map ploting
heat.scale: Plots a heat map color scale, for legend
LPS: Linear Predictor Score fitting
LPS.coeff: Linear Predictor Score coefficient computation
OVL: Overlap quantification for LPS object
plot.LPS: Plot method for LPS objects
predict.LPS: Predict method for LPS objects
rosenwald: Rosenwald et al. Lymphochip data
surv.colors: Produces visual representation of survival data
surv.scale: Plots a survival color scale, for legend

Functions

LPS Man page Source code
LPS-class Man page
LPS.coeff Man page Source code
LPS.k.form Source code
LPS.p.form Source code
OVL Man page Source code
clusterize Man page Source code
dist.COR Man page Source code
excl Source code
hclust.ward Man page Source code
heat Man page Source code
heat.exp Man page Source code
heat.lin Man page Source code
heat.map Man page Source code
heat.scale Man page Source code
plot.LPS Man page Source code
predict.LPS Man page Source code
rain Source code
rosenwald Man page
rosenwald.cli Man page
rosenwald.expr Man page
surv.colors Man page Source code
surv.scale Man page Source code
var.formula Source code

Files

inst
inst/NEWS.Rd
NAMESPACE
data
data/rosenwald.rda
R
R/plot.LPS.r
R/surv.colors.r
R/predict.LPS.r
R/LPS.coeff.r
R/heat_tools.r
R/heat.r
R/LPS.form.r
R/OVL.r
R/var.formula.r
R/clusterize.r
R/heat.scale.r
R/LPS.r
R/surv.scale.r
R/heat.map.r
README.md
MD5
DESCRIPTION
man
man/surv.colors.Rd
man/heat.Rd
man/heat.scale.Rd
man/LPS.Rd
man/heat.map.Rd
man/plot.LPS.Rd
man/predict.LPS.Rd
man/rosenwald.Rd
man/OVL.Rd
man/LPS.coeff.Rd
man/clusterize.Rd
man/surv.scale.Rd
LPS documentation built on May 29, 2017, 5:24 p.m.