Man pages for LTFHPlus
Implementation of LT-FH++
| attach_attributes | Attach attributes to a family graphs |
| construct_covmat | Constructing a covariance matrix for a variable number of... |
| construct_covmat_multi | Constructing a covariance matrix for multiple phenotypes |
| construct_covmat_single | Constructing a covariance matrix for a single phenotype |
| convert_age_to_cir | Convert age to cumulative incidence rate |
| convert_age_to_thresh | Convert age to threshold |
| convert_cir_to_age | Convert cumulative incidence rate to age |
| convert_format | Attempts to convert the list entry input format to a long... |
| convert_liability_to_aoo | Convert liability to age of onset |
| convert_observed_to_liability_scale | Convert the heritability on the observed scale to that on the... |
| correct_positive_definite | Positive definite matrices |
| estimate_gen_liability_ltfh | Estimate genetic liability similar to LT-FH |
| estimate_liability | Estimating the genetic or full liability for a variable... |
| estimate_liability_multi | Estimating the genetic or full liability for multiple... |
| estimate_liability_single | Estimating the genetic or full liability |
| familywise_attach_attributes | Wrapper to attach attributes to family graphs |
| fixSexCoding | Fixing sex coding in trio info |
| get_all_combs | construct all combinations of input vector |
| get_family_graphs | Automatically identify family members of degree n |
| get_generations | Compute Generational Distances and Kinship Coefficients from... |
| get_kinship | Construct kinship matrix from graph |
| get_relatedness | Relatedness between a pair of family members |
| get_relations | Compute and Label Pairwise Relationships Across Multiple... |
| graph_based_covariance_construction | Constructing covariance matrix from local family graph |
| graph_based_covariance_construction_multi | Constructing covariance matrix from local family graph for... |
| graph_to_trio | Convert from igraph to trio information |
| label_relatives | Label Pairwise Relationships Based on Generational Distance... |
| LTFHPlus-package | LTFHPlus: Implementation of LT-FH++ |
| prepare_graph | Construct graph from register information |
| prepare_LTFHPlus_input | Prepares input for 'estimate_liability' |
| Relation_per_proband_plot | Plot the (Average) Number of Relatives per Proband by... |
| rtmvnorm.gibbs | Gibbs Sampler for the truncated multivariate normal... |
| simulate_under_LTM | Simulate under the liability threshold model. |
| simulate_under_LTM_multi | Simulate under the liability threshold model (multiple... |
| simulate_under_LTM_single | Simulate under the liability threshold model (single... |
| truncated_normal_cdf | CDF for truncated normal distribution. |
