run_multi_LWFB90: Make a multirun simulation using a set of variable input...

In LWFBrook90R: Simulate Evapotranspiration and Soil Moisture with the SVAT Model LWF-Brook90

Make a multirun simulation using a set of variable input parameters.

Description

Wrapper function for run_LWFB90 to make multiple simulations parallel, with varying input parameters.

Usage

run_multi_LWFB90(
  paramvar,
  param_b90,
  paramvar_nms = names(paramvar),
  cores = 2,
  show_progress = TRUE,
  ...
)

Arguments

paramvar	Data.frame of variable input parameters. For each row, a simulation is performed, with the elements in param_b90 being replaced by the respective column of paramvar. All parameter names (column names) in paramvar must be found in param_b90. See section Parameter updating.
param_b90	Named list of parameters, in which the parameters defined in paramvar will be replaced.
paramvar_nms	Names of the parameters in paramvar to be replaced in param_b90.
cores	Number of CPUs to use for parallel processing. Default is 2.
show_progress	Logical: Show progress bar? Default is TRUE. See also section Progress bar below.
...	Additional arguments passed to run_LWFB90: provide at least the arguments that have no defaults such as options_b90 and climate).

Value

A named list with the results of the single runs as returned by run_LWFB90. Simulation or processing errors are passed on.

Parameter updating

The transfer of values from a row in paramvar to param_b90 before each single run simulation is done by matching names from paramvar and param_b90. In order to address data.frame or vector elements in param_b90 by a column name in paramvar, the respective column name has to be set up from its name and index in param_b90. To replace, e.g., the 2nd value of ths in the soil_materials data.frame, the respective column name in paramvar has to be called 'soil_materials.ths2'. In order to replace the 3rd value of maxlai vector in param_b90, the column has to be named 'maxlai3'.

Data management

The returned list of single run results can become very large, if many simulations are performed and the selected output contains daily resolution data sets, especially daily layer-wise soil moisture data. To not overload memory, it is advised to reduce the returned simulation results to a minimum, by carefully selecting the output, and make use of the option to pass a list of functions to run_LWFB90 via argument output_fun. These functions perform directly on the output of a single run simulation, and can be used for aggregating model output on-the-fly, or for writing results to a file or database. The regular output of run_LWFB90 can be suppressed by setting rtrn.output = FALSE, for exclusively returning the output of such functions.

Progress bar

This function provides a progress bar via the package progressr if show_progress=TRUE. The parallel computation is then wrapped with progressr::with_progress() to enable progress reporting from distributed calculations. The appearance of the progress bar (including audible notification) can be customized by the user for the entire session using progressr::handlers() (see vignette('progressr-intro')).

Examples

data("slb1_meteo")
data("slb1_soil")

# Set up lists containing model control options and model parameters:
parms <- set_paramLWFB90()
# choose the 'Coupmodel' shape option for the annual lai dynamic,
# with fixed budburst and leaf fall dates:
opts <- set_optionsLWFB90(startdate = as.Date("2003-06-01"),
                                 enddate = as.Date("2003-06-30"),
                                 lai_method = 'Coupmodel',
                                 budburst_method = 'fixed',
                                 leaffall_method = 'fixed')

# Derive soil hydraulic properties from soil physical properties using pedotransfer functions
soil <- cbind(slb1_soil, hydpar_wessolek_tab(slb1_soil$texture))

#set up data.frame with variable parameters
n <- 10
set.seed(2021)
vary_parms <- data.frame(shp_optdoy = runif(n,180,240),
                         shp_budburst = runif(n, 0.1,1),
                         winlaifrac = runif(n, 0,0.5),
                         budburstdoy = runif(n,100,150),
                         soil_materials.ths3 = runif(n, 0.3,0.5), # ths of material 3
                         maxlai = runif(n,2,7))

# add the soil as soil_nodes and soil materials to param_b90, so ths3 can be looked up
parms[c("soil_nodes", "soil_materials")] <- soil_to_param(soil)

# Make a Multirun-Simulation
b90.multi <- run_multi_LWFB90(paramvar = vary_parms,
                        param_b90 = parms,
                        options_b90 = opts,
                        climate = slb1_meteo)
names(b90.multi)

# extract results
evapday <- data.table::rbindlist(
  lapply(b90.multi, FUN = function(x) { x$output[,c("yr", "doy", "evap")] }),
  idcol = "srun")

evapday$dates <- as.Date(paste(evapday$yr, evapday$doy),"%Y %j")

srun_nms <- unique(evapday$srun)

with(evapday[evapday$srun == srun_nms[1], ],
     plot(dates, cumsum(evap), type = "n",
          ylim = c(0,100))
)
for (i in 1:length(b90.multi)){
  with(evapday[evapday$srun == srun_nms[i], ],
       lines(dates, cumsum(evap)))
}

LWFBrook90R documentation built on Oct. 17, 2023, 1:10 a.m.