kraken_res: Kraken results
In LifemapR: Data Visualisation on 'Lifemap' Tree
kraken_res R Documentation
Kraken results
Description
A dataset containing NCBI information of 1000 eukaryotes. The variables are as follows:
Usage
data(kraken_res)
Format
A data frame with 4427 rows and 6 variables:
- coverage_percent
Percentage of fragments covered by the clade rooted at this taxon
- coverage_number
Number of fragments covered by the clade rooted at this taxon
- fragment_number
Number of fragments assigned directly to this taxon
- rank
A rank code, indicating (U)nclassified, (R)oot, (D)omain, (K)ingdom, (P)hylum, (C)lass, (O)rder, (F)amily, (G)enus, or (S)pecies. Taxa that are not at any of these 10 ranks have a rank code that is formed by using the rank code of the closest ancestor rank with a number indicating the distance from that rank. E.g., "G2" is a rank code indicating a taxon is between genus and species and the grandparent taxon is at the genus rank.
- taxid
NCBI taxonomic ID number
- name
Indented scientific name
LifemapR documentation built on April 12, 2025, 1:58 a.m.
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| kraken_res | R Documentation |
Kraken results
Description
A dataset containing NCBI information of 1000 eukaryotes. The variables are as follows:
Usage
data(kraken_res)
Format
A data frame with 4427 rows and 6 variables:
- coverage_percent
Percentage of fragments covered by the clade rooted at this taxon
- coverage_number
Number of fragments covered by the clade rooted at this taxon
- fragment_number
Number of fragments assigned directly to this taxon
- rank
A rank code, indicating (U)nclassified, (R)oot, (D)omain, (K)ingdom, (P)hylum, (C)lass, (O)rder, (F)amily, (G)enus, or (S)pecies. Taxa that are not at any of these 10 ranks have a rank code that is formed by using the rank code of the closest ancestor rank with a number indicating the distance from that rank. E.g., "G2" is a rank code indicating a taxon is between genus and species and the grandparent taxon is at the genus rank.
- taxid
NCBI taxonomic ID number
- name
Indented scientific name
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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