func_li08: Example ODE function: bacterial cell cycle.
In LoopDetectR: Comprehensive Feedback Loop Detection in ODE Models
Description
Usage
Format
Details
Source
Description
The file contains the function definition an ordinary differential equation
model of Caulobacter crescentus cell cycle as proposed by Li et al., 2008.
It has 18 variables.
Usage
1
Format
R file with definition of function func_li08 that takes as
input arguments time t (dimension 1), and variable values y (dimension 18).
the kinetic parameters are defined within the function.
Details
The Caulobacter cell cycle model function will only give the solution as
shown in the publication [Li et al., 2008] if the change in variables at
defined events are taken into account. Please refer to the original
reference for details.
Source
The Caulobacter cell cycle model was proposed in
Li S, Brazhnik P, Sobral B, Tyson JJ. A Quantitative Study of the
Division Cycle of Caulobacter crescentus Stalked Cells. Plos Comput Biol.
2008;4(1):e9. The function corresponds to the MATLAB function modelwtin(t,y)
as given on http://mpf.biol.vt.edu/research/caulobacter/SWST/pp/.
LoopDetectR documentation built on July 20, 2020, 5:07 p.m.
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Description Usage Format Details Source
Description
The file contains the function definition an ordinary differential equation model of Caulobacter crescentus cell cycle as proposed by Li et al., 2008. It has 18 variables.
Usage
1 |
Format
R file with definition of function func_li08 that takes as input arguments time t (dimension 1), and variable values y (dimension 18). the kinetic parameters are defined within the function.
Details
The Caulobacter cell cycle model function will only give the solution as shown in the publication [Li et al., 2008] if the change in variables at defined events are taken into account. Please refer to the original reference for details.
Source
The Caulobacter cell cycle model was proposed in Li S, Brazhnik P, Sobral B, Tyson JJ. A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells. Plos Comput Biol. 2008;4(1):e9. The function corresponds to the MATLAB function modelwtin(t,y) as given on http://mpf.biol.vt.edu/research/caulobacter/SWST/pp/.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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