Nothing
## ----eval = FALSE-------------------------------------------------------------
# library(MAAPER)
#
# pas_annotation = readRDS("./mouse.PAS.mm9.rds")
# gtf = "./gencode.mm9.chr19.gtf"
# # bam file of condition 1 (could be a vector if there are multiple samples)
# bam_c1 = "./NT_chr19_example.bam"
# # bam file of condition 2 (could be a vector if there are multiple samples)
# bam_c2 = "./AS_4h_chr19_example.bam"
#
# maaper(gtf, # full path of the GTF file
# pas_annotation, # PAS annotation
# output_dir = "./", # output directory
# bam_c1, bam_c2, # full path of the BAM files
# read_len = 76, # read length
# ncores = 12 # number of cores used for parallel computation
# )
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