geno.format: Format genotype matrix
In MADPop: MHC Allele-Based Differencing Between Populations
geno.format R Documentation
Format genotype matrix
Description
Convert a 4-column genotype matrix or data.frame into a simplified numerical format.
Usage
geno.format(X, Y.only = TRUE)
Arguments
X
Genotype matrix or data.frame.
Y.only
Logical. Whether or not to output only Y (see return).
Value
A list with elements
Y: A 4-column numeric matrix. Each row is sorted with zeros indicating missing alleles.
A: Vector of allele names.
G: Unique allele combinations, i.e. Y without duplicated rows.
MADPop documentation built on Oct. 13, 2023, 5:09 p.m.
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| geno.format | R Documentation |
Format genotype matrix
Description
Convert a 4-column genotype matrix or data.frame into a simplified numerical format.
Usage
geno.format(X, Y.only = TRUE)
Arguments
X |
Genotype matrix or data.frame. |
Y.only |
Logical. Whether or not to output only |
Value
A list with elements
Y: A 4-column numeric matrix. Each row is sorted with zeros indicating missing alleles.
A: Vector of allele names.
G: Unique allele combinations, i.e. Y without duplicated rows.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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