MALDIquantForeign: Import/Export Routines for MALDIquant

Functions for reading (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and writing (tab, csv, mMass MSD, mzML, imzML) different file formats of mass spectrometry data into/from MALDIquant objects.

AuthorSebastian Gibb [aut, cre], Pietro Franceschi [ctb]
Date of publication2015-11-01 00:36:34
MaintainerSebastian Gibb <mail@sebastiangibb.de>
LicenseGPL (>= 3)
Version0.10
http://strimmerlab.org/software/maldiquant/ https://github.com/sgibb/MALDIquantForeign/

View on CRAN

Functions

.base64encode Man page
export Man page
export,AbstractMassObject-method Man page
exportCsv Man page
exportCsv,AbstractMassObject-method Man page
exportCsv,list-method Man page
exportImzMl Man page
exportImzMl,list-method Man page
exportImzMl,MassSpectrum-method Man page
export,list-method Man page
exportMsd Man page
exportMsd,list-method Man page
exportMsd,MassSpectrum-method Man page
exportMzMl Man page
exportMzMl,list-method Man page
exportMzMl,MassSpectrum-method Man page
exportTab Man page
exportTab,AbstractMassObject-method Man page
exportTab,list-method Man page
import Man page
importAnalyze Man page
importBrukerFlex Man page
importCdf Man page
importCiphergenXml Man page
importCsv Man page
importImzMl Man page
importMsd Man page
importMzMl Man page
importMzXml Man page
importTab Man page
importTxt Man page
MALDIquantForeign-package Man page
MALDIquantForeign-parallel Man page
supportedFileFormats Man page

Files

MALDIquantForeign
MALDIquantForeign/inst
MALDIquantForeign/inst/exampledata
MALDIquantForeign/inst/exampledata/tiny_continuous.ibd
MALDIquantForeign/inst/exampledata/tiny1-centroided.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/csv1.csv
MALDIquantForeign/inst/exampledata/tiny1-centroided.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/tiny1.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/tiny1.msd
MALDIquantForeign/inst/exampledata/tiny1.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/tiny_processed.ibd
MALDIquantForeign/inst/exampledata/tiny_continuous.imzML
MALDIquantForeign/inst/exampledata/ascii.txt
MALDIquantForeign/inst/exampledata/tiny.cdf
MALDIquantForeign/inst/exampledata/ciphergen
MALDIquantForeign/inst/exampledata/ciphergen/tiny.xml
MALDIquantForeign/inst/exampledata/brukerflex
MALDIquantForeign/inst/exampledata/brukerflex/0_A1
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin/fid
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin/acqu
MALDIquantForeign/inst/exampledata/compressed
MALDIquantForeign/inst/exampledata/compressed/csv.zip
MALDIquantForeign/inst/exampledata/compressed/csv1.csv.gz
MALDIquantForeign/inst/exampledata/compressed/csv.tar.gz
MALDIquantForeign/inst/exampledata/tiny1-compressed.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/tiny1-compressed.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/csv2.csv
MALDIquantForeign/inst/exampledata/tiny_processed.imzML
MALDIquantForeign/inst/doc
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.Rnw
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.R
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.pdf
MALDIquantForeign/tests
MALDIquantForeign/tests/testthat.R
MALDIquantForeign/tests/testthat
MALDIquantForeign/tests/testthat/test_list.files-functions.R
MALDIquantForeign/tests/testthat/test_exportMsd-methods.R
MALDIquantForeign/tests/testthat/test_exportImzMl-methods.R
MALDIquantForeign/tests/testthat/test_importBrukerFlex-functions.R
MALDIquantForeign/tests/testthat/test_testChecksum-functions.R
MALDIquantForeign/tests/testthat/test_msg-functions.R
MALDIquantForeign/tests/testthat/test_importCdf-functions.R
MALDIquantForeign/tests/testthat/test_createMassObject-functions.R
MALDIquantForeign/tests/testthat/test_download-functions.R
MALDIquantForeign/tests/testthat/test_importMzMl-functions.R
MALDIquantForeign/tests/testthat/test_importCiphergenXml-functions.R
MALDIquantForeign/tests/testthat/test_exportTab-methods.R
MALDIquantForeign/tests/testthat/test_filename-functions.R
MALDIquantForeign/tests/testthat/test_importMzXml-functions.R
MALDIquantForeign/tests/testthat/test_compression-functions.R
MALDIquantForeign/tests/testthat/test_exportMzMl-methods.R
MALDIquantForeign/tests/testthat/test_uuid-functions.R
MALDIquantForeign/tests/testthat/test_importMsd-functions.R
MALDIquantForeign/tests/testthat/test_importTab-functions.R
MALDIquantForeign/tests/testthat/test_importImzMl-functions.R
MALDIquantForeign/tests/testthat/test_ibd-functions.R
MALDIquantForeign/tests/testthat/test_fileFormats.R
MALDIquantForeign/tests/testthat/test_sanitize-functions.R
MALDIquantForeign/NAMESPACE
MALDIquantForeign/NEWS
MALDIquantForeign/R
MALDIquantForeign/R/AllGenerics.R MALDIquantForeign/R/filename-methods.R MALDIquantForeign/R/export-functions.R MALDIquantForeign/R/download-function.R MALDIquantForeign/R/mzMl-functions.R MALDIquantForeign/R/fileFormats.R MALDIquantForeign/R/importAnalyze-functions.R MALDIquantForeign/R/base64encode-functions.R MALDIquantForeign/R/createMassObject-functions.R MALDIquantForeign/R/filename-functions.R MALDIquantForeign/R/importCdf-functions.R MALDIquantForeign/R/importImzMl-functions.R MALDIquantForeign/R/importBrukerFlex-functions.R MALDIquantForeign/R/testChecksum-functions.R MALDIquantForeign/R/exportTab-methods.R MALDIquantForeign/R/list.files-functions.R MALDIquantForeign/R/importCiphergenXml-functions.R MALDIquantForeign/R/msg-functions.R MALDIquantForeign/R/importMzMl-functions.R MALDIquantForeign/R/compression-functions.R MALDIquantForeign/R/MALDIquantForeign-parallel.R MALDIquantForeign/R/exportImzMl-methods.R MALDIquantForeign/R/imzMl-functions.R MALDIquantForeign/R/sanitize-functions.R MALDIquantForeign/R/ibd-functions.R MALDIquantForeign/R/importMzXml-functions.R MALDIquantForeign/R/uuid-functions.R MALDIquantForeign/R/msd-functions.R MALDIquantForeign/R/xml-functions.R MALDIquantForeign/R/export-methods.R MALDIquantForeign/R/exportMsd-methods.R MALDIquantForeign/R/package.R MALDIquantForeign/R/parseMsd.R MALDIquantForeign/R/import-functions.R MALDIquantForeign/R/importMsd-functions.R MALDIquantForeign/R/parseMzMl.R MALDIquantForeign/R/parseCiphergenXml.R MALDIquantForeign/R/importAuto-functions.R MALDIquantForeign/R/exportMzMl-methods.R MALDIquantForeign/R/analyze-functions.R MALDIquantForeign/R/importTab-functions.R
MALDIquantForeign/vignettes
MALDIquantForeign/vignettes/bibliography.bib
MALDIquantForeign/vignettes/MALDIquantForeign-intro.Rnw
MALDIquantForeign/MD5
MALDIquantForeign/build
MALDIquantForeign/build/vignette.rds
MALDIquantForeign/DESCRIPTION
MALDIquantForeign/man
MALDIquantForeign/man/importBrukerFlex-functions.Rd MALDIquantForeign/man/importImzMl-functions.Rd MALDIquantForeign/man/importTab-functions.Rd MALDIquantForeign/man/exportMzMl-methods.Rd MALDIquantForeign/man/supportedFileFormats-functions.Rd MALDIquantForeign/man/importMzMl-functions.Rd MALDIquantForeign/man/importCdf-functions.Rd MALDIquantForeign/man/importMzXml-functions.Rd MALDIquantForeign/man/importMsd-functions.Rd MALDIquantForeign/man/importAnalyze-functions.Rd MALDIquantForeign/man/export-methods.Rd MALDIquantForeign/man/base64-encode.Rd MALDIquantForeign/man/import-functions.Rd MALDIquantForeign/man/exportMsd-methods.Rd MALDIquantForeign/man/exportTab-methods.Rd MALDIquantForeign/man/MALDIquantForeign-parallel.Rd MALDIquantForeign/man/importCiphergenXml-functions.Rd MALDIquantForeign/man/exportImzMl-methods.Rd MALDIquantForeign/man/MALDIquantForeign-package.Rd

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