MALDIquantForeign: Import/Export Routines for MALDIquant

Functions for reading (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and writing (tab, csv, mMass MSD, mzML, imzML) different file formats of mass spectrometry data into/from MALDIquant objects.

Author
Sebastian Gibb [aut, cre], Pietro Franceschi [ctb]
Date of publication
2015-11-01 00:36:34
Maintainer
Sebastian Gibb <mail@sebastiangibb.de>
License
GPL (>= 3)
Version
0.10
URLs

View on CRAN

Man pages

base64-encode
Converts double to base64 character.
exportImzMl-methods
Export to imzML files
export-methods
Export files
exportMsd-methods
Export to MSD files
exportMzMl-methods
Export to mzML files
exportTab-methods
Export to text files
importAnalyze-functions
Import Analyze 7.5 files
importBrukerFlex-functions
Import Bruker Daltonics *flex files
importCdf-functions
Import CDF files
importCiphergenXml-functions
Import Ciphergen XML files
import-functions
Import files
importImzMl-functions
Import imzML files
importMsd-functions
Import MSD files
importMzMl-functions
Import mzML files
importMzXml-functions
Import mzXML files
importTab-functions
Import text files
MALDIquantForeign-package
Import/Export routines for MALDIquant
MALDIquantForeign-parallel
Parallel Support in Package 'MALDIquantForeign'
supportedFileFormats-functions
Supported file formats

Files in this package

MALDIquantForeign
MALDIquantForeign/inst
MALDIquantForeign/inst/exampledata
MALDIquantForeign/inst/exampledata/tiny_continuous.ibd
MALDIquantForeign/inst/exampledata/tiny1-centroided.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/csv1.csv
MALDIquantForeign/inst/exampledata/tiny1-centroided.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/tiny1.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/tiny1.msd
MALDIquantForeign/inst/exampledata/tiny1.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/tiny_processed.ibd
MALDIquantForeign/inst/exampledata/tiny_continuous.imzML
MALDIquantForeign/inst/exampledata/ascii.txt
MALDIquantForeign/inst/exampledata/tiny.cdf
MALDIquantForeign/inst/exampledata/ciphergen
MALDIquantForeign/inst/exampledata/ciphergen/tiny.xml
MALDIquantForeign/inst/exampledata/brukerflex
MALDIquantForeign/inst/exampledata/brukerflex/0_A1
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin/fid
MALDIquantForeign/inst/exampledata/brukerflex/0_A1/1/1SLin/acqu
MALDIquantForeign/inst/exampledata/compressed
MALDIquantForeign/inst/exampledata/compressed/csv.zip
MALDIquantForeign/inst/exampledata/compressed/csv1.csv.gz
MALDIquantForeign/inst/exampledata/compressed/csv.tar.gz
MALDIquantForeign/inst/exampledata/tiny1-compressed.mzML1.1.mzML
MALDIquantForeign/inst/exampledata/tiny1-compressed.mzXML3.0.mzXML
MALDIquantForeign/inst/exampledata/csv2.csv
MALDIquantForeign/inst/exampledata/tiny_processed.imzML
MALDIquantForeign/inst/doc
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.Rnw
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.R
MALDIquantForeign/inst/doc/MALDIquantForeign-intro.pdf
MALDIquantForeign/tests
MALDIquantForeign/tests/testthat.R
MALDIquantForeign/tests/testthat
MALDIquantForeign/tests/testthat/test_list.files-functions.R
MALDIquantForeign/tests/testthat/test_exportMsd-methods.R
MALDIquantForeign/tests/testthat/test_exportImzMl-methods.R
MALDIquantForeign/tests/testthat/test_importBrukerFlex-functions.R
MALDIquantForeign/tests/testthat/test_testChecksum-functions.R
MALDIquantForeign/tests/testthat/test_msg-functions.R
MALDIquantForeign/tests/testthat/test_importCdf-functions.R
MALDIquantForeign/tests/testthat/test_createMassObject-functions.R
MALDIquantForeign/tests/testthat/test_download-functions.R
MALDIquantForeign/tests/testthat/test_importMzMl-functions.R
MALDIquantForeign/tests/testthat/test_importCiphergenXml-functions.R
MALDIquantForeign/tests/testthat/test_exportTab-methods.R
MALDIquantForeign/tests/testthat/test_filename-functions.R
MALDIquantForeign/tests/testthat/test_importMzXml-functions.R
MALDIquantForeign/tests/testthat/test_compression-functions.R
MALDIquantForeign/tests/testthat/test_exportMzMl-methods.R
MALDIquantForeign/tests/testthat/test_uuid-functions.R
MALDIquantForeign/tests/testthat/test_importMsd-functions.R
MALDIquantForeign/tests/testthat/test_importTab-functions.R
MALDIquantForeign/tests/testthat/test_importImzMl-functions.R
MALDIquantForeign/tests/testthat/test_ibd-functions.R
MALDIquantForeign/tests/testthat/test_fileFormats.R
MALDIquantForeign/tests/testthat/test_sanitize-functions.R
MALDIquantForeign/NAMESPACE
MALDIquantForeign/NEWS
MALDIquantForeign/R
MALDIquantForeign/R/AllGenerics.R
MALDIquantForeign/R/filename-methods.R
MALDIquantForeign/R/export-functions.R
MALDIquantForeign/R/download-function.R
MALDIquantForeign/R/mzMl-functions.R
MALDIquantForeign/R/fileFormats.R
MALDIquantForeign/R/importAnalyze-functions.R
MALDIquantForeign/R/base64encode-functions.R
MALDIquantForeign/R/createMassObject-functions.R
MALDIquantForeign/R/filename-functions.R
MALDIquantForeign/R/importCdf-functions.R
MALDIquantForeign/R/importImzMl-functions.R
MALDIquantForeign/R/importBrukerFlex-functions.R
MALDIquantForeign/R/testChecksum-functions.R
MALDIquantForeign/R/exportTab-methods.R
MALDIquantForeign/R/list.files-functions.R
MALDIquantForeign/R/importCiphergenXml-functions.R
MALDIquantForeign/R/msg-functions.R
MALDIquantForeign/R/importMzMl-functions.R
MALDIquantForeign/R/compression-functions.R
MALDIquantForeign/R/MALDIquantForeign-parallel.R
MALDIquantForeign/R/exportImzMl-methods.R
MALDIquantForeign/R/imzMl-functions.R
MALDIquantForeign/R/sanitize-functions.R
MALDIquantForeign/R/ibd-functions.R
MALDIquantForeign/R/importMzXml-functions.R
MALDIquantForeign/R/uuid-functions.R
MALDIquantForeign/R/msd-functions.R
MALDIquantForeign/R/xml-functions.R
MALDIquantForeign/R/export-methods.R
MALDIquantForeign/R/exportMsd-methods.R
MALDIquantForeign/R/package.R
MALDIquantForeign/R/parseMsd.R
MALDIquantForeign/R/import-functions.R
MALDIquantForeign/R/importMsd-functions.R
MALDIquantForeign/R/parseMzMl.R
MALDIquantForeign/R/parseCiphergenXml.R
MALDIquantForeign/R/importAuto-functions.R
MALDIquantForeign/R/exportMzMl-methods.R
MALDIquantForeign/R/analyze-functions.R
MALDIquantForeign/R/importTab-functions.R
MALDIquantForeign/vignettes
MALDIquantForeign/vignettes/bibliography.bib
MALDIquantForeign/vignettes/MALDIquantForeign-intro.Rnw
MALDIquantForeign/MD5
MALDIquantForeign/build
MALDIquantForeign/build/vignette.rds
MALDIquantForeign/DESCRIPTION
MALDIquantForeign/man
MALDIquantForeign/man/importBrukerFlex-functions.Rd
MALDIquantForeign/man/importImzMl-functions.Rd
MALDIquantForeign/man/importTab-functions.Rd
MALDIquantForeign/man/exportMzMl-methods.Rd
MALDIquantForeign/man/supportedFileFormats-functions.Rd
MALDIquantForeign/man/importMzMl-functions.Rd
MALDIquantForeign/man/importCdf-functions.Rd
MALDIquantForeign/man/importMzXml-functions.Rd
MALDIquantForeign/man/importMsd-functions.Rd
MALDIquantForeign/man/importAnalyze-functions.Rd
MALDIquantForeign/man/export-methods.Rd
MALDIquantForeign/man/base64-encode.Rd
MALDIquantForeign/man/import-functions.Rd
MALDIquantForeign/man/exportMsd-methods.Rd
MALDIquantForeign/man/exportTab-methods.Rd
MALDIquantForeign/man/MALDIquantForeign-parallel.Rd
MALDIquantForeign/man/importCiphergenXml-functions.Rd
MALDIquantForeign/man/exportImzMl-methods.Rd
MALDIquantForeign/man/MALDIquantForeign-package.Rd