MALDIquantForeign: Import/Export Routines for MALDIquant

Functions for reading (tab, csv, Bruker fid, Ciphergen XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and writing (tab, csv, mMass MSD, mzML, imzML) different file formats of mass spectrometry data into/from MALDIquant objects.

Install the latest version of this package by entering the following in R:
install.packages("MALDIquantForeign")
AuthorSebastian Gibb [aut, cre], Pietro Franceschi [ctb]
Date of publication2015-11-01 00:36:34
MaintainerSebastian Gibb <mail@sebastiangibb.de>
LicenseGPL (>= 3)
Version0.10
http://strimmerlab.org/software/maldiquant/ https://github.com/sgibb/MALDIquantForeign/

View on CRAN

Functions

.base64encode Man page
export Man page
export,AbstractMassObject-method Man page
exportCsv Man page
exportCsv,AbstractMassObject-method Man page
exportCsv,list-method Man page
exportImzMl Man page
exportImzMl,list-method Man page
exportImzMl,MassSpectrum-method Man page
export,list-method Man page
exportMsd Man page
exportMsd,list-method Man page
exportMsd,MassSpectrum-method Man page
exportMzMl Man page
exportMzMl,list-method Man page
exportMzMl,MassSpectrum-method Man page
exportTab Man page
exportTab,AbstractMassObject-method Man page
exportTab,list-method Man page
import Man page
importAnalyze Man page
importBrukerFlex Man page
importCdf Man page
importCiphergenXml Man page
importCsv Man page
importImzMl Man page
importMsd Man page
importMzMl Man page
importMzXml Man page
importTab Man page
importTxt Man page
MALDIquantForeign-package Man page
MALDIquantForeign-parallel Man page
supportedFileFormats Man page

Files

inst
inst/exampledata
inst/exampledata/tiny_continuous.ibd
inst/exampledata/tiny1-centroided.mzML1.1.mzML
inst/exampledata/csv1.csv
inst/exampledata/tiny1-centroided.mzXML3.0.mzXML
inst/exampledata/tiny1.mzXML3.0.mzXML
inst/exampledata/tiny1.msd
inst/exampledata/tiny1.mzML1.1.mzML
inst/exampledata/tiny_processed.ibd
inst/exampledata/tiny_continuous.imzML
inst/exampledata/ascii.txt
inst/exampledata/tiny.cdf
inst/exampledata/ciphergen
inst/exampledata/ciphergen/tiny.xml
inst/exampledata/brukerflex
inst/exampledata/brukerflex/0_A1
inst/exampledata/brukerflex/0_A1/1
inst/exampledata/brukerflex/0_A1/1/1SLin
inst/exampledata/brukerflex/0_A1/1/1SLin/fid
inst/exampledata/brukerflex/0_A1/1/1SLin/acqu
inst/exampledata/compressed
inst/exampledata/compressed/csv.zip
inst/exampledata/compressed/csv1.csv.gz
inst/exampledata/compressed/csv.tar.gz
inst/exampledata/tiny1-compressed.mzML1.1.mzML
inst/exampledata/tiny1-compressed.mzXML3.0.mzXML
inst/exampledata/csv2.csv
inst/exampledata/tiny_processed.imzML
inst/doc
inst/doc/MALDIquantForeign-intro.Rnw
inst/doc/MALDIquantForeign-intro.R
inst/doc/MALDIquantForeign-intro.pdf
tests
tests/testthat.R
tests/testthat
tests/testthat/test_list.files-functions.R tests/testthat/test_exportMsd-methods.R tests/testthat/test_exportImzMl-methods.R tests/testthat/test_importBrukerFlex-functions.R tests/testthat/test_testChecksum-functions.R tests/testthat/test_msg-functions.R tests/testthat/test_importCdf-functions.R tests/testthat/test_createMassObject-functions.R tests/testthat/test_download-functions.R tests/testthat/test_importMzMl-functions.R tests/testthat/test_importCiphergenXml-functions.R tests/testthat/test_exportTab-methods.R tests/testthat/test_filename-functions.R tests/testthat/test_importMzXml-functions.R tests/testthat/test_compression-functions.R tests/testthat/test_exportMzMl-methods.R tests/testthat/test_uuid-functions.R tests/testthat/test_importMsd-functions.R tests/testthat/test_importTab-functions.R tests/testthat/test_importImzMl-functions.R tests/testthat/test_ibd-functions.R tests/testthat/test_fileFormats.R tests/testthat/test_sanitize-functions.R
NAMESPACE
NEWS
R
R/AllGenerics.R R/filename-methods.R R/export-functions.R R/download-function.R R/mzMl-functions.R R/fileFormats.R R/importAnalyze-functions.R R/base64encode-functions.R R/createMassObject-functions.R R/filename-functions.R R/importCdf-functions.R R/importImzMl-functions.R R/importBrukerFlex-functions.R R/testChecksum-functions.R R/exportTab-methods.R R/list.files-functions.R R/importCiphergenXml-functions.R R/msg-functions.R R/importMzMl-functions.R R/compression-functions.R R/MALDIquantForeign-parallel.R R/exportImzMl-methods.R R/imzMl-functions.R R/sanitize-functions.R R/ibd-functions.R R/importMzXml-functions.R R/uuid-functions.R R/msd-functions.R R/xml-functions.R R/export-methods.R R/exportMsd-methods.R R/package.R R/parseMsd.R R/import-functions.R R/importMsd-functions.R R/parseMzMl.R R/parseCiphergenXml.R R/importAuto-functions.R R/exportMzMl-methods.R R/analyze-functions.R R/importTab-functions.R
vignettes
vignettes/bibliography.bib
vignettes/MALDIquantForeign-intro.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/importBrukerFlex-functions.Rd man/importImzMl-functions.Rd man/importTab-functions.Rd man/exportMzMl-methods.Rd man/supportedFileFormats-functions.Rd man/importMzMl-functions.Rd man/importCdf-functions.Rd man/importMzXml-functions.Rd man/importMsd-functions.Rd man/importAnalyze-functions.Rd man/export-methods.Rd man/base64-encode.Rd man/import-functions.Rd man/exportMsd-methods.Rd man/exportTab-methods.Rd man/MALDIquantForeign-parallel.Rd man/importCiphergenXml-functions.Rd man/exportImzMl-methods.Rd man/MALDIquantForeign-package.Rd

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