inst/doc/MAPITR.Intro.SimulatedData.R

In MAPITR: MArginal ePIstasis Test for Regions

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library("MAPITR")

data(MAPITR_SimData_Phenotype, MAPITR_SimData_Genotypes, MAPITR_SimData_Pathways, MAPITR_SimData_PCs)

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MAPITR_SimData_Genotypes[1:10,1:10]

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head(MAPITR_SimData_Phenotype)

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head(MAPITR_SimData_Pathways)

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MAPITR_Output <- MAPITR(MAPITR_SimData_Genotypes, MAPITR_SimData_Phenotype, MAPITR_SimData_Pathways)

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head(MAPITR_Output$Results)

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MAPITR_Output$Results[MAPITR_Output$Results[,2] < .01,]

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MAPITR_SimData_PCs[1:5,1:10]
MAPITR_Output2 <- MAPITR(MAPITR_SimData_Genotypes, MAPITR_SimData_Phenotype, MAPITR_SimData_Pathways, Covariates=MAPITR_SimData_PCs)
MAPITR_Output2$Results[MAPITR_Output2$Results[,2] < .01,]