MBCluster.Seq: Model-Based Clustering for RNA-seq Data

Cluster genes based on Poisson or Negative-Binomial model for RNA-Seq or other digital gene expression (DGE) data

AuthorYaqing Si
Date of publication2012-10-29 08:57:16
MaintainerYaqing Si <siyaqing@gmail.com>
LicenseGPL (>= 3)
Version1.0

View on CRAN

Functions

cl.mb Man page
cl.mb.est.MC Man page
cl.mb.est.P Man page
cl.nb.est.c Man page
cl.nb.est.m Man page
cl.nb.est.mc Man page
cl.ps.est.mc Man page
Cluster.RNASeq Man page
Count Man page
dst2center.pairs Man page
dst.euclidean.pair Man page
dst.KL Man page
dst.maximum.pair Man page
dst.pairs Man page
est.nb.mu.mle.one Man page
est.nb.v.QL Man page
Hybrid.Tree Man page
Hybrid.Tree.Microarray Man page
in.tree Man page
KmeansPlus.RNASeq Man page
leaf.color Man page
lglk.cluster Man page
lglk.cluster.one Man page
lglk.nb Man page
lglk.nb.c Man page
lglk.ps Man page
lglk.ps.1c Man page
lglk.ps.c Man page
loc.node Man page
maxRow Man page
MBCluster.Seq.Internal Man page
meanRow Man page
MI.1 Man page
MI.2 Man page
MI.Cluster.Annotation Man page
minRow Man page
MI.score.one Man page
move.two Man page
NMI.score Man page
plotbr Man page
plotHybrid.Tree Man page
RNASeq.Data Man page
sortNode Man page
sumCol Man page
sumRow Man page
tree.K Man page

Files

MBCluster.Seq
MBCluster.Seq/data
MBCluster.Seq/data/Count.RData
MBCluster.Seq/NAMESPACE
MBCluster.Seq/man
MBCluster.Seq/man/KmeansPlus.RNASeq.Rd MBCluster.Seq/man/plotHybrid.Tree.Rd MBCluster.Seq/man/RNASeq.Data.Rd MBCluster.Seq/man/Cluster.RNASeq.Rd MBCluster.Seq/man/Count.Rd MBCluster.Seq/man/Hybrid.Tree.Rd MBCluster.Seq/man/MBCluster.Seq.Internal.Rd
MBCluster.Seq/DESCRIPTION
MBCluster.Seq/MD5
MBCluster.Seq/R
MBCluster.Seq/R/Tree.r
MBCluster.Seq/R/Output.r
MBCluster.Seq/R/KmeansPlus.r
MBCluster.Seq/R/MBCluster.Seq.Internal.r
MBCluster.Seq/R/HybridTree-KM.r
MBCluster.Seq/R/Cluster.r
MBCluster.Seq/R/Distance.r
MBCluster.Seq/R/Score.r
MBCluster.Seq/R/Math.r
MBCluster.Seq/R/LGLK.r
MBCluster.Seq/R/tree-K.r
MBCluster.Seq/R/Estimation.r

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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