MBCluster.Seq: Model-Based Clustering for RNA-seq Data

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Cluster genes based on Poisson or Negative-Binomial model for RNA-Seq or other digital gene expression (DGE) data

Author
Yaqing Si
Date of publication
2012-10-29 08:57:16
Maintainer
Yaqing Si <siyaqing@gmail.com>
License
GPL (>= 3)
Version
1.0

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Man pages

Cluster.RNASeq
Do clustering for count data based on poisson or...
Count
Sample of Count Data
Hybrid.Tree
Do hybrid-hierarchical clustering for RNA-seq data
KmeansPlus.RNASeq
Initialize the cluster centroids by a model-based Kmeans++...
MBCluster.Seq.Internal
Internal function for MBCluster.Seq package
plotHybrid.Tree
Plot the tree structure of the hybrid-hierarchical clustering...
RNASeq.Data
Standardize RNASeq Data for Clustering

Files in this package

MBCluster.Seq
MBCluster.Seq/data
MBCluster.Seq/data/Count.RData
MBCluster.Seq/NAMESPACE
MBCluster.Seq/man
MBCluster.Seq/man/KmeansPlus.RNASeq.Rd
MBCluster.Seq/man/plotHybrid.Tree.Rd
MBCluster.Seq/man/RNASeq.Data.Rd
MBCluster.Seq/man/Cluster.RNASeq.Rd
MBCluster.Seq/man/Count.Rd
MBCluster.Seq/man/Hybrid.Tree.Rd
MBCluster.Seq/man/MBCluster.Seq.Internal.Rd
MBCluster.Seq/DESCRIPTION
MBCluster.Seq/MD5
MBCluster.Seq/R
MBCluster.Seq/R/Tree.r
MBCluster.Seq/R/Output.r
MBCluster.Seq/R/KmeansPlus.r
MBCluster.Seq/R/MBCluster.Seq.Internal.r
MBCluster.Seq/R/HybridTree-KM.r
MBCluster.Seq/R/Cluster.r
MBCluster.Seq/R/Distance.r
MBCluster.Seq/R/Score.r
MBCluster.Seq/R/Math.r
MBCluster.Seq/R/LGLK.r
MBCluster.Seq/R/tree-K.r
MBCluster.Seq/R/Estimation.r