MCMC Generalised Linear Mixed Models

at.level | Incidence Matrix of Levels within a Factor |

at.set | Incidence Matrix of Combined Levels within a Factor |

BTdata | Blue Tit Data for a Quantitative Genetic Experiment |

BTped | Blue Tit Pedigree |

buildV | Forms expected (co)variances for GLMMs fitted with MCMCglmm |

commutation | Commutation Matrix |

dcmvnorm | Density of a (conditional) multivariate normal variate |

Ddivergence | d-divergence |

Dexpressions | List of unevaluated expressions for (mixed) partial... |

Dtensor | Tensor of (mixed) partial derivatives |

evalDtensor | Evaluates a list of (mixed) partial derivatives |

gelman.prior | Prior Covariance Matrix for Fixed Effects. |

inverseA | Inverse Relatedness Matrix and Phylogenetic Covariance Matrix |

knorm | (Mixed) Central Moments of a Multivariate Normal Distribution |

KPPM | Kronecker Product Permutation Matrix |

krzanowski.test | Krzanowski's Comparison of Subspaces |

kunif | Central Moments of a Uniform Distribution |

list2bdiag | Forms the direct sum from a list of matrices |

MCMCglmm | Multivariate Generalised Linear Mixed Models |

MCMCglmmPackage | Multivariate Generalised Linear Mixed Models |

mult.memb | Design Matrices for Multiple Membership Models |

path | Design Matrix for Path Analyses |

PlodiaPO | Phenoloxidase measures on caterpillars of the Indian meal... |

PlodiaR | Resistance of Indian meal moth caterpillars to the granulosis... |

PlodiaRB | Resistance (as a binary trait) of Indian meal moth... |

plot.MCMCglmm | Plots MCMC chains from MCMCglmm using plot.mcmc |

plotsubspace | Plots covariance matrices |

posterior.ante | Posterior distribution of ante-dependence parameters |

posterior.cor | Transforms posterior distribution of covariances into... |

posterior.evals | Posterior distribution of eigenvalues |

posterior.inverse | Posterior distribution of matrix inverse |

posterior.mode | Estimates the marginal parameter modes using kernel density... |

predict.MCMCglmm | Predict method for GLMMs fitted with MCMCglmm |

prunePed | Pedigree pruning |

Ptensor | Tensor of Sample (Mixed) Central Moments |

rbv | Random Generation of MVN Breeding Values and Phylogenetic... |

residuals.MCMCglmm | Residuals form a GLMM fitted with MCMCglmm |

rIW | Random Generation from the Conditional Inverse Wishart... |

rtcmvnorm | Random Generation from a Truncated Conditional Normal... |

rtnorm | Random Generation from a Truncated Normal Distribution |

simulate.MCMCglmm | Simulate method for GLMMs fitted with MCMCglmm |

sir | Design Matrix for Simultaneous and Recursive Relationships... |

sm2asreml | Converts sparseMatrix to asreml's giv format |

spl | Orthogonal Spline Design Matrix |

SShorns | Horn type and genders of Soay Sheep |

summary.MCMCglmm | Summarising GLMM Fits from MCMCglmm |

Tri2M | Lower/Upper Triangle Elements of a Matrix |

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