MDM: Multinomial Diversity Model

The multinomial diversity model is a toolbox for relating diversity to complex predictors. It is based on (1) Shannon diversity; (2) the multinomial logit model, and (3) the link between Shannon diversity and the log-likelihood of the MLM.

Author
Glenn De'ath <g.death@aims.gov.au>; Code for mdm was adapted from multinom in the nnet package (Brian Ripley <ripley@stats.ox.ac.uk> and Bill Venables <Bill.Venables@csiro.au>)
Date of publication
2013-07-10 11:12:01
Maintainer
Glenn De'ath <g.death@aims.gov.au>
License
GPL-2 | GPL-3
Version
1.3

View on CRAN

Man pages

anova.mdm
Analysis of Deviance, Entropy and Diversity Tables
dev2div
Converts deviances to diversities
ed
Calculate alpha, beta and gamma true entropies and...
ed1
Calculate alpha, beta and gamma true entropies and...
eds
Calculate alpha, beta and gamma parametric entropies and...
eds1
Calculate alpha, beta and gamma parametric entropies and...
entropy.plot
Entropy plot
mdm
Fits the parameteric diversity model
MDM-package
Multinomial Diversity Model
simdata
Species abundance data simulator
spider6
The spider data set
y2p
Scale rows of a species-sites data set

Files in this package

MDM
MDM/MD5
MDM/man
MDM/man/y2p.Rd
MDM/man/spider6.Rd
MDM/man/simdata.Rd
MDM/man/mdm.Rd
MDM/man/entropy.plot.Rd
MDM/man/eds1.Rd
MDM/man/eds.Rd
MDM/man/ed1.Rd
MDM/man/ed.Rd
MDM/man/dev2div.Rd
MDM/man/anova.mdm.Rd
MDM/man/MDM-package.Rd
MDM/demo
MDM/demo/spider6.R
MDM/demo/corals.R
MDM/demo/00Index
MDM/data
MDM/data/spider6.RData
MDM/R
MDM/R/y2p.R
MDM/R/simdata.R
MDM/R/mdm.R
MDM/R/entropy.plot.R
MDM/R/eds1.R
MDM/R/eds.R
MDM/R/ed1.R
MDM/R/ed.R
MDM/R/dev2div.R
MDM/R/anova.mdm.R
MDM/NAMESPACE
MDM/DESCRIPTION
MDM/CHANGES