mcmc_r: A sample object created by running Metro_Hastings().

Description Usage Examples

Description

Result of a Markov Chain Monte Carlo run on a simple Bayesian linear regression model. For demonstrating BCI, plotMH, and mcmc_thin

Usage

1

Examples

1
2
3
4

Example output

Loading required package: MASS
             0.025    0.975   post_mean
a       -6.6113522 7.038858 0.001852978
b        0.2217377 1.543519 0.902057671
epsilon  3.8094802 6.550360 4.957292114
$trace
               [,1]       [,2]     [,3]
  [1,]   3.14481364 0.72112284 5.449728
  [2,]   0.42718763 0.90148413 5.333821
  [3,]  -3.11565446 1.06425785 5.398436
  [4,]   1.74347216 0.77436083 3.439364
  [5,]   0.42208787 0.86427765 4.593773
  [6,]  -3.51290264 1.20927698 4.728588
  [7,]   0.35812131 0.72776651 5.714279
  [8,]  -1.25206592 1.14971142 5.912923
  [9,]  -0.04188738 0.87683166 4.664978
 [10,]   1.33395122 0.72490486 4.008683
 [11,]  -2.52181967 1.19762685 4.593960
 [12,]   2.97118610 0.66843994 5.622410
 [13,]  -1.33365506 0.97501505 4.365843
 [14,]  -2.89173109 1.21203829 4.998392
 [15,]  -5.68520336 1.33022244 4.879939
 [16,]   1.71744409 0.76031365 4.660014
 [17,]  -3.70461970 1.26018045 4.667429
 [18,]  -0.40580912 1.05666724 4.962804
 [19,]  -2.11077160 1.07869648 4.672750
 [20,]  -1.48699461 1.08827418 4.503795
 [21,]   1.78130440 0.65475474 5.719159
 [22,]  -7.11352848 1.57946336 4.433648
 [23,]  -1.67369114 1.16249140 4.156629
 [24,]   4.92519891 0.57543739 6.267946
 [25,]   2.22070389 0.54175577 6.482519
 [26,]  -1.45722027 1.00150840 3.868086
 [27,]   1.20205245 0.77672516 6.497259
 [28,]  -0.24277581 1.07796757 6.702719
 [29,]  -2.91358404 1.20302424 4.727843
 [30,]   4.91636552 0.47046809 4.318905
 [31,]   1.27308018 0.64512423 3.965257
 [32,]  -2.70647219 1.00899952 5.005391
 [33,]   1.40903568 0.82028430 4.368284
 [34,]  -0.73321073 1.16325505 5.050432
 [35,]  -2.89669662 1.04107298 5.210051
 [36,]   1.08839737 0.88964785 4.797255
 [37,]   6.86848936 0.17039357 4.517992
 [38,]  -2.61087963 1.20210707 5.515510
 [39,]  -0.94017075 1.01752471 4.680650
 [40,]  -1.53771694 1.16957504 6.248468
 [41,]   1.75230424 0.58888103 4.459558
 [42,]   5.76478215 0.33710576 4.912578
 [43,]  -2.55402652 1.11460766 4.803634
 [44,]  -5.77937238 1.47472712 5.059107
 [45,]  -0.89446043 1.08123472 4.729822
 [46,]  -3.34920075 1.18802567 4.931948
 [47,]  -0.75493721 0.92876350 3.711642
 [48,]   2.21304815 0.69391815 5.579061
 [49,]  -1.35728633 1.08057787 5.493384
 [50,]   0.54085777 0.87977410 5.317231
 [51,]  -5.01524328 1.26859966 4.675327
 [52,]   1.36847250 0.90242228 5.141732
 [53,]  -1.56700253 1.01388662 4.546867
 [54,]   2.00673306 0.58960522 5.135607
 [55,]  -2.22985757 1.17239767 4.600351
 [56,]   2.64827913 0.61927259 5.485371
 [57,]   2.04989079 0.79181254 4.654667
 [58,]   1.58518252 0.84850536 4.762846
 [59,]   8.40520135 0.14868931 5.820668
 [60,]  -5.85366638 1.57469241 4.899289
 [61,]  -0.26170113 0.84944339 4.768030
 [62,]  -3.78717014 1.19337241 4.759447
 [63,]  -4.98561097 1.36160204 5.122724
 [64,]   0.71704095 0.71009458 4.423669
 [65,]  -6.26432233 1.28909125 5.691354
 [66,]  -0.12297950 0.96037141 5.631436
 [67,]   0.09028637 0.89125052 6.182376
 [68,]  -9.15839549 1.80741453 5.560600
 [69,]  -0.86490920 1.04377928 6.052820
 [70,]   0.79826396 0.88285714 4.688376
 [71,]  -0.15142439 0.86533127 5.143153
 [72,]  -0.82974185 0.96801681 5.617306
 [73,]   0.31036228 0.90398243 4.549570
 [74,]   1.14111300 0.81518961 4.494186
 [75,]  -4.43785126 1.35901092 5.938522
 [76,]  -0.38880007 0.84305029 6.043133
 [77,]   0.01800613 0.95703602 5.393592
 [78,]  -4.95705714 1.29132562 4.578715
 [79,]  -3.87976236 1.30926078 5.890846
 [80,]  -0.03596368 0.95577883 5.086670
 [81,]  -7.54382812 1.62254849 5.063303
 [82,]   2.75511988 0.63896244 4.537962
 [83,]   2.56475386 0.65086576 4.498626
 [84,]  -2.70335398 1.32859610 5.791342
 [85,]  -4.42508657 1.34638727 5.041746
 [86,]  -0.59269539 1.06437508 4.942204
 [87,]  -0.97094838 1.03859794 3.847335
 [88,]   3.04385263 0.52080808 4.613445
 [89,]   8.84502463 0.18396286 5.323354
 [90,]  -3.31692077 1.10282400 4.747957
 [91,]  -7.25300524 1.64302409 5.661333
 [92,]  -2.88633847 1.09775517 5.092456
 [93,]  -0.85175008 1.04298339 5.025242
 [94,]   1.05593383 0.78636227 4.404662
 [95,]  -2.20182059 1.00155501 4.951919
 [96,]  -2.97532795 1.41938978 5.957219
 [97,]  -3.21596742 1.23910244 4.867643
 [98,]   1.11679299 0.76541772 4.599083
 [99,]   5.25081263 0.54519895 4.473479
[100,]  -1.99156736 1.04282771 4.994145
[101,]  -1.69294463 0.95342172 5.369881
[102,]  -0.86624868 0.91806832 5.554159
[103,]  -1.01047830 1.02346670 4.310817
[104,]   3.20485401 0.67816296 4.867164
[105,]  -1.19359891 1.05114594 4.791005
[106,]   1.98667026 0.82870535 7.858956
[107,]  -0.24778773 0.84856177 4.326361
[108,]  -1.00821059 1.05723762 4.561281
[109,]  -1.08073581 0.96911818 4.365573
[110,]  -3.12408157 1.19247639 4.102546
[111,]  -1.96081549 0.93716462 4.868686
[112,]   5.18150358 0.41200276 5.606895
[113,]   1.59492536 0.67917488 7.513071
[114,]   4.20119145 0.50475745 5.166772
[115,]   2.23770670 0.72759944 4.884739
[116,]   2.81759176 0.58217307 4.184337
[117,]   3.22044335 0.72456889 5.340381
[118,]   2.91356056 0.66599788 4.722272
[119,]   0.18616542 0.88191913 4.585665
[120,]  -0.18346937 0.81666847 4.847944
[121,]  -2.44915552 1.24801723 6.346271
[122,]  -3.43517651 1.21829325 5.408487
[123,]  -3.63019283 1.24007309 3.997496
[124,]  -5.12904562 1.37532816 4.743287
[125,]  -1.23014200 0.93819513 3.620658
[126,]   6.27650521 0.26377768 6.107170
[127,]   0.30108320 0.93725793 3.710649
[128,]  -1.67188815 1.17082078 6.845954
[129,]   0.79799633 0.92080103 4.834150
[130,]  -2.55712996 1.15693040 4.519223
[131,]  -5.35886243 1.37999013 5.439068
[132,]  -4.45068814 1.46151653 6.345401
[133,]   0.39999821 0.94182299 4.573364
[134,]   3.88186295 0.51048984 5.683264
[135,]   2.51281258 0.65829532 4.158555
[136,]   4.38850477 0.49784611 4.662869
[137,]   2.96509970 0.70103203 5.516018
[138,]  -8.52540745 1.72586566 5.819180
[139,]  -0.50480111 0.91785713 4.138573
[140,]  -5.04200760 1.41719969 5.448584
[141,]  -2.62436368 1.26570467 5.231136
[142,]  -0.74781429 0.83620029 4.593571
[143,]  -0.95815576 0.96601141 5.110054
[144,]   2.85152786 0.74396380 3.937836
[145,]  -0.80405931 0.82601349 4.230443
[146,]  -1.18089536 1.10108496 3.645128
[147,]  -6.84535662 1.50670826 5.034849
[148,]   3.16434473 0.66382322 4.476165
[149,]  -2.70158382 1.17323777 5.290173
[150,]   0.31305901 0.92289322 4.139086
[151,]  -5.25572574 1.30751575 4.126429
[152,]  -1.59768995 1.08830437 4.732415
[153,]  -0.75072930 0.96194098 6.045067
[154,]  -3.46567344 1.24816490 3.926897
[155,]   7.11119554 0.19624759 5.004246
[156,]   0.05435064 0.91658890 5.675527
[157,]  -1.27127658 1.02283861 4.824483
[158,]  -2.14040363 0.99072901 6.789531
[159,]  -2.48748646 1.20136231 5.371576
[160,]  -4.81060680 1.19442995 5.614079
[161,]  -5.53726579 1.30787776 6.575472
[162,]   4.56933004 0.38111705 4.376743
[163,] -10.90312365 1.84932063 5.878051
[164,]  -3.84992307 1.29248652 4.677379
[165,]   0.13713586 0.78405824 5.095016
[166,]  -2.87222016 1.16981958 5.237862
[167,]   2.82319275 0.50776900 3.944911
[168,]   0.48701991 0.77091010 5.977621
[169,]   2.95106604 0.63227462 5.726461
[170,]   1.67447355 0.86268471 6.149754
[171,]  -0.60492772 1.02693720 3.882015
[172,]   3.46353910 0.48881735 4.560554
[173,]  -2.96487568 1.20142297 5.141432
[174,]   0.77874802 0.76048386 6.571024
[175,]   3.27520987 0.52808052 4.094022
[176,]  -0.84467808 1.08737536 5.637651
[177,]   1.99462290 0.83939577 4.571819
[178,]   3.92146674 0.40735978 6.213675
[179,]  -0.72450683 1.02015950 4.377401
[180,]   1.81977320 0.75762038 4.483845
[181,]  -3.19784673 1.14590503 6.329331
[182,]   5.53294902 0.35060966 4.592258
[183,]   0.90502252 0.73121139 5.837363
[184,]  -0.44584478 0.86686869 5.559758
[185,]   5.62727201 0.42806108 4.111655
[186,]   4.51251035 0.46513245 3.583267
[187,]  -2.24157554 1.03011244 4.717157
[188,]  -1.41934927 1.03843197 4.055727
[189,]   3.13998468 0.58341087 4.041915
[190,]  -0.78443808 0.94715926 6.314033
[191,]   0.38000835 0.92457070 4.584749
[192,]  -1.18852741 1.11473974 4.497240
[193,]   4.30031426 0.51305853 4.256732
[194,]   0.33196367 0.91193940 4.717833
[195,]   0.29695189 0.82370044 3.773270
[196,]   0.56526916 0.82897765 4.174150
[197,]  -3.52505131 1.09060078 5.436758
[198,]   0.73910765 0.76024832 5.362653
[199,]  -7.70984771 1.65088535 5.511730
[200,]  -0.44937168 0.95684107 4.760793
[201,]  -1.50909537 1.02130741 4.650754
[202,]  -3.72659695 1.29426047 4.274987
[203,]  -2.88067926 1.19433116 4.609483
[204,]  -4.53247440 1.28839715 4.427441
[205,]   5.30080176 0.24968060 4.574027
[206,]  -3.99972944 1.36035877 5.001010
[207,]   5.77806973 0.34097769 4.662406
[208,]  -3.60970581 1.39350033 5.763940
[209,]  -2.47232678 1.12203475 4.891602
[210,]   3.46567428 0.54966494 4.198860
[211,]  -0.58545654 0.90072995 4.083465
[212,]  -5.62519739 1.30139302 6.235567
[213,]  -0.02537068 0.93014883 4.198759
[214,]  -1.37300942 0.81879092 5.046840
[215,]  -0.76336942 0.94433548 4.199311
[216,]   0.71026419 0.63112337 5.629061
[217,]  -0.35961010 1.14285597 4.450221
[218,]  -3.19615089 1.08650495 5.026581
[219,]  -5.98964870 1.41881274 5.692083
[220,]   1.58456872 0.80332131 5.404145
[221,]   1.31157324 0.75209275 4.995261
[222,]  -8.08363747 1.77983391 4.397579
[223,]  -2.67092353 1.19165607 4.819682
[224,]   3.96554832 0.53913377 5.319394
[225,]  -1.11318827 1.09187479 5.950781
[226,]   2.69512598 0.71887627 3.981363
[227,]  -0.04308175 0.81941955 5.588083
[228,]  -0.64906076 0.86899963 5.263376
[229,]   4.79236123 0.45841876 4.930450
[230,]  -1.68950258 1.04589188 4.027272
[231,]   0.77628563 0.82618746 5.498595
[232,]  -3.58963258 1.27662581 6.135518
[233,]   0.71097216 0.71449776 4.156758
[234,]  -0.61356507 1.13018484 5.127088
[235,]   2.88448645 0.84024897 5.507204
[236,]  -4.07298191 1.27166297 5.867537
[237,]   0.69729549 0.79203938 6.289910
[238,]   1.74919066 0.75138949 4.383990
[239,]   0.76648608 0.70221731 4.856538
[240,]  -1.89159789 1.10659145 5.325470
[241,]   1.53970052 0.74891760 4.982608
[242,]   2.54185390 0.63966396 4.933316
[243,]   2.37908755 0.77572153 4.436395
[244,]  -1.14606677 1.10536164 5.351368
[245,]   4.23283192 0.45795288 6.230957
[246,]   4.26479188 0.46658029 5.626491
[247,]   1.07583677 0.76543372 5.978957
[248,]  -1.06540877 1.25276423 4.470320
[249,]   1.91716526 0.62370264 4.355410
[250,]   0.69249306 0.73862064 4.743114
[251,]  -0.32119881 0.93371591 5.068159
[252,]  -7.00006458 1.44950611 6.180738
[253,]  -6.85067687 1.61948441 5.842948
[254,]   3.52644334 0.51399084 4.780008
[255,]  -2.06649807 1.08545300 5.959006
[256,]   0.29749863 0.76907884 3.990536
[257,]  -4.40060496 1.43587351 7.030579
[258,]   4.75171820 0.31402178 4.338610
[259,]   4.45913332 0.43215651 5.342944
[260,]   1.69057357 0.67896631 5.378582
[261,]  -0.69991362 0.79680610 5.117661
[262,]  -0.05830857 0.93193336 5.237704
[263,]  -0.16724258 0.88725688 5.433217
[264,]  -0.46621134 0.88479596 3.980033
[265,]  -0.84832294 0.94962706 4.279419
[266,]   0.45546579 0.81482858 4.153422
[267,]   0.43540741 0.97793451 4.700090
[268,]   2.23957773 0.76947547 3.910712
[269,]   4.57137884 0.38554310 6.253062
[270,]   2.47135146 0.75434138 4.503217
[271,]  -0.51825140 1.01979153 4.277052
[272,]   1.14565520 0.76057894 3.890455
[273,]  -1.93805566 1.07613177 4.079733
[274,]   4.54841211 0.51276987 5.290064
[275,]   2.32428519 0.74263354 5.422154
[276,]   3.62613418 0.63096405 4.943891
[277,]   4.51774495 0.41817725 5.017709
[278,]   3.15043247 0.63524365 4.562086
[279,]   1.85085342 0.61849639 4.721419
[280,]  -3.45359530 1.09383238 5.018692
[281,]  -1.64707946 1.09634517 5.312429
[282,]   5.34345954 0.40737667 5.157713
[283,]   1.45783829 0.68006975 4.268366
[284,]   2.78967424 0.74572552 5.228830
[285,]  -2.27087777 1.10359481 4.405749
[286,]  -1.54915434 1.02964248 4.048630
[287,]  -1.28053037 1.11794516 5.502658
[288,]   7.81519779 0.09381293 5.171331
[289,]  -4.02973136 1.17176731 6.963641
[290,]   3.81139187 0.55285761 6.112667
[291,]   2.30559948 0.69212847 5.039726
[292,]   9.25020361 0.01503440 5.432615
[293,]   1.26442351 0.63332154 4.410409
[294,]  -1.79711532 1.15931362 4.385881
[295,]  -7.48421102 1.56433249 4.650826
[296,]   5.53727066 0.27909326 5.249690
[297,]   1.80779323 0.65387258 4.751331
[298,]   2.61815846 0.57593533 5.275032
[299,]  -2.66977669 1.04505789 4.545419
[300,]   0.29414608 0.82011678 4.843727
[301,]   5.09099185 0.39924093 5.040546
[302,]  -0.23222813 1.01955191 5.656458
[303,]  -0.20082018 0.87414176 4.354026
[304,]  -4.43623276 1.09320017 7.516117
[305,]  -0.11653949 0.88975024 4.479827
[306,]  -0.55337460 1.06898196 5.430096
[307,]   7.22773013 0.14617991 4.893645
[308,]   0.29544878 0.92060913 6.391955
[309,]  -4.06465416 1.28394747 5.084180
[310,]   0.20322339 0.77844761 6.162080
[311,]  -5.10524205 1.34490217 5.872402
[312,]   0.28696804 0.76369423 5.179868
[313,]  -0.36137913 0.88455692 5.610729
[314,]  -3.95002605 1.33924488 4.329012
[315,]  -3.14889537 1.12848648 5.201361
[316,]  -3.62637038 1.37942983 5.328988
[317,]  -2.31649062 1.09826452 4.678953
[318,]  -1.70542558 1.15118816 5.610235
[319,]   5.10956240 0.37710752 5.308800
[320,]  -0.01109714 0.95911679 4.594445
[321,]  -0.91290423 1.04658514 5.937359
[322,]  -3.60705814 1.13571101 5.018173
[323,]  -3.23707380 1.25030673 4.553379
[324,]  -1.94152167 1.19779883 6.180285
[325,]   1.36264560 0.72329525 4.416839
[326,]   0.99143815 0.85645974 4.252056
[327,]   2.81274529 0.55379829 4.152691
[328,]   1.08911413 0.79231304 5.568234
[329,]  -1.67010150 0.98140868 4.839409
[330,]   3.91530272 0.72964352 5.037701
[331,]  -2.49570153 1.25201036 4.526137
[332,]   1.06017344 0.81110418 4.216522
[333,]  -3.51070004 1.15739942 4.194410
[334,]  -2.14377056 1.23123170 4.821191
[335,]   1.13462636 0.80347251 4.265984
[336,]   7.79844400 0.07331269 4.790808
[337,]   4.71724305 0.50377271 4.755551
[338,]   2.20804011 0.55130997 5.746819
[339,]  -2.56209764 1.22378899 5.303596
[340,]   3.10026381 0.47169624 4.665319
[341,]  -5.36571776 1.55039660 4.921287
[342,]  -2.51428270 1.08374270 4.835538
[343,]  -1.84653661 1.12682958 4.426487
[344,]   1.78460450 0.82068594 4.179350
[345,]   0.71829068 0.82782880 5.216131
[346,]  -5.41134478 1.43271061 5.856504
[347,]  -5.76912984 1.40019651 5.901610
[348,]   1.03216429 0.64248104 5.193562
[349,]   0.56651445 0.92800450 6.232920
[350,]   0.01506724 0.95428669 5.184409
[351,]  -2.75719519 1.08706308 4.224556
[352,]  -1.69455207 1.09237812 3.821164
[353,]   5.90271675 0.34692308 7.024527
[354,]   1.51187572 0.50935912 5.841260
[355,]  -2.54284056 1.14102306 3.929206
[356,]  -3.53590320 1.21980399 4.566628
[357,]  -4.70479162 1.20545150 4.649290
[358,]  -0.17075019 0.81941514 5.389106
[359,]   1.45508879 0.94069174 5.859227
[360,]  -5.79363218 1.50043405 4.836770
[361,]  -3.48240654 1.26182285 4.671313
[362,]   0.07646665 0.97590193 6.106880
[363,]   1.66317763 0.71075575 4.866252
[364,]   4.64072825 0.45305849 6.125483
[365,]  -4.95100410 1.47881805 4.739259
[366,]  -4.61996185 1.24476007 4.932646
[367,]   2.37814824 0.52909482 4.659224
[368,]   2.73099861 0.74850518 4.515840
[369,]   0.61979767 1.03529983 4.647267
[370,]  -0.11640353 1.03717562 5.383289
[371,]   7.63610826 0.06971991 5.216555
[372,]   0.28570596 0.83943290 3.907632
[373,]   2.88507567 0.63977628 5.312883
[374,]  -7.44291723 1.50550862 7.156958
[375,]  -1.87630479 1.09885542 4.332700
[376,]  -1.04651409 0.98779285 4.352667
[377,]  -1.53810061 1.20292496 5.167647
[378,]   5.14494161 0.56320883 4.828954
[379,]   2.14558412 0.70483208 5.295176
[380,]  -0.02761656 0.76968005 4.893913
[381,]   0.74029419 0.85260688 4.931886
[382,]   1.52418647 0.79062486 5.195339
[383,]   1.14497379 0.89130420 6.408712
[384,]  -0.06811427 0.93050135 4.298864
[385,]   2.36851730 0.76546412 4.710903
[386,]   1.41660469 0.72083179 5.520525
[387,]  -0.86761461 0.92584713 5.176989
[388,]  -1.74408668 1.14464376 3.871344
[389,]   5.03296471 0.28127847 6.701306
[390,]   3.65961876 0.75385695 6.850242
[391,]   2.16802516 0.60242401 4.730202
[392,]  -1.37795392 0.95800929 5.412988
[393,]   1.06610472 0.80712704 4.383127

$prop_sigma
           [,1]          [,2]          [,3]
[1,] 11.3367039 -1.0555202544 -0.0105216982
[2,] -1.0555203  0.1062465736  0.0008961612
[3,] -0.0105217  0.0008961612  0.4905635380

$par_names
[1] "a"       "b"       "epsilon"

$DIC
[1] 525.8434

$acceptance_rate
[1] 0.4307347

MHadaptive documentation built on May 1, 2019, 10:31 p.m.