MIAmaxent: Maxent Distribution Model Selection

Share:

Tools for training, selecting, and evaluating maximum entropy (Maxent) distribution models. This package provides tools for user- controlled transformation of explanatory variables, selection of variables by nested model comparison, and flexible model evaluation and projection. It is based on the strict maximum likelihood interpretation of maximum entropy modelling.

Author
Julien Vollering [aut, cre], Sabrina Mazzoni [aut], Rune Halvorsen [aut]
Date of publication
2016-09-14 11:46:11
Maintainer
Julien Vollering <julien.vollering@hisf.no>
License
MIT + file LICENSE
Version
0.3.7
URLs

View on CRAN

Man pages

deriveVars
Derive variables by transformation.
MIAmaxent
MIAmaxent: Maxent Distribution Model Selection.
modelfromlambdas
Maxent model from .lambdas file.
plotFOP
Plot Frequency of Observed Presence (FOP).
plotResp
Plot single-effect model response.
plotResp2
Plot marginal-effect model response.
projectModel
Project model to data.
readData
Read in data object from files.
release_questions
Reminders when using devtools::release
selectDVforEV
Select parsimonious sets of derived variables.
selectEV
Select parsimonious set of explanatory variables.
testAUC
Calculate model AUC with test data.
toydata_dvs
Derived variables and transformation functions, from toy...
toydata_seldvs
Selected derived variables accompanied by selection trails,...
toydata_selevs
Selected explanatory variables accompanied by selection...
toydata_sp1po
Occurrence and environmental toy data.

Files in this package

MIAmaxent
MIAmaxent/inst
MIAmaxent/inst/java
MIAmaxent/inst/java/README-java
MIAmaxent/inst/extdata
MIAmaxent/inst/extdata/occurrence_PA.csv
MIAmaxent/inst/extdata/occurrence_PO.csv
MIAmaxent/inst/extdata/EV_categorical
MIAmaxent/inst/extdata/EV_categorical/geolmja1.asc
MIAmaxent/inst/extdata/EV_categorical/geoberg.asc
MIAmaxent/inst/extdata/EV_categorical/terslpps15.asc
MIAmaxent/inst/extdata/EV_categorical/lcucor1.asc
MIAmaxent/inst/extdata/EV_categorical/lcutil_t4.asc
MIAmaxent/inst/extdata/EV_continuous
MIAmaxent/inst/extdata/EV_continuous/teraspif.asc
MIAmaxent/inst/extdata/EV_continuous/pr_bygall.asc
MIAmaxent/inst/extdata/EV_continuous/tertpi09.asc
MIAmaxent/inst/extdata/EV_continuous/pr_tilany.asc
MIAmaxent/inst/extdata/EV_continuous/tersolrade.asc
MIAmaxent/inst/extdata/EV_continuous/pca1.asc
MIAmaxent/inst/extdata/EV_continuous/terdem.asc
MIAmaxent/inst/extdata/EV_continuous/terslpdg.asc
MIAmaxent/inst/extdata/1.lambdas
MIAmaxent/inst/extdata/sommerfeltia
MIAmaxent/inst/extdata/sommerfeltia/Sp1.csv
MIAmaxent/inst/extdata/sommerfeltia/EV_continuous
MIAmaxent/inst/extdata/sommerfeltia/EV_continuous/EV14.asc
MIAmaxent/inst/extdata/sommerfeltia/EV_continuous/EV11.asc
MIAmaxent/inst/extdata/sommerfeltia/EV_continuous/EV12.asc
MIAmaxent/inst/extdata/sommerfeltia/EV_continuous/EV13.asc
MIAmaxent/inst/extdata/sommerfeltia/1.lambdas
MIAmaxent/inst/doc
MIAmaxent/inst/doc/modeling-example.html
MIAmaxent/inst/doc/modeling-example.html.asis
MIAmaxent/NAMESPACE
MIAmaxent/NEWS.md
MIAmaxent/data
MIAmaxent/data/toydata_selevs.rda
MIAmaxent/data/toydata_sp1po.rda
MIAmaxent/data/toydata_dvs.rda
MIAmaxent/data/toydata_seldvs.rda
MIAmaxent/R
MIAmaxent/R/utils.R
MIAmaxent/R/plotResp.R
MIAmaxent/R/parsevs.R
MIAmaxent/R/modelfromlambdas.R
MIAmaxent/R/selectEV.R
MIAmaxent/R/deriveVars.R
MIAmaxent/R/plotFOP.R
MIAmaxent/R/data.R
MIAmaxent/R/MIAmaxent.R
MIAmaxent/R/testAUC.R
MIAmaxent/R/plotResp2.R
MIAmaxent/R/dvsfromev.R
MIAmaxent/R/transfclosures.R
MIAmaxent/R/parsdvs.R
MIAmaxent/R/readData.R
MIAmaxent/R/selectDVforEV.R
MIAmaxent/R/splselect.R
MIAmaxent/R/projectModel.R
MIAmaxent/vignettes
MIAmaxent/vignettes/modeling-example.Rmd
MIAmaxent/vignettes/modeling-example.html.asis
MIAmaxent/README.md
MIAmaxent/MD5
MIAmaxent/build
MIAmaxent/build/vignette.rds
MIAmaxent/DESCRIPTION
MIAmaxent/man
MIAmaxent/man/toydata_selevs.Rd
MIAmaxent/man/figures
MIAmaxent/man/figures/workflow-flowchart.png
MIAmaxent/man/figures/workflow-flowchart.pdf
MIAmaxent/man/toydata_seldvs.Rd
MIAmaxent/man/deriveVars.Rd
MIAmaxent/man/selectDVforEV.Rd
MIAmaxent/man/toydata_dvs.Rd
MIAmaxent/man/testAUC.Rd
MIAmaxent/man/readData.Rd
MIAmaxent/man/selectEV.Rd
MIAmaxent/man/modelfromlambdas.Rd
MIAmaxent/man/plotResp2.Rd
MIAmaxent/man/plotResp.Rd
MIAmaxent/man/toydata_sp1po.Rd
MIAmaxent/man/MIAmaxent.Rd
MIAmaxent/man/plotFOP.Rd
MIAmaxent/man/projectModel.Rd
MIAmaxent/man/release_questions.Rd
MIAmaxent/LICENSE