This package contains functions to carry out processing of high throughput data analysis and detection of putative hits/mutants. Contents include a function for posthoc quality control for removal of outlier sample sets, a medianbased normalization method for use in datasets where there are no explicit controls and where most of the responses are of the wildtype/no response class (see accompanying paper). The package also includes a way to prioritize individuals of interest using am empirical cumulative distribution function. Methods for generating synthetic data as well as data from the Chloroplast 2010 project are included.
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Author  Shannon M. Bell <bell.shannonm@gmail.com>, Lyle D. Burgoon <burgoon.lyle@epa.gov> 
Date of publication  20120127 11:27:41 
Maintainer  Shannon M. Bell <bell.shannonm@gmail.com> 
License  GPL (>= 3) 
Version  1.2 
Package repository  View on CRAN 
Installation  Install the latest version of this package by entering the following in R:

Functions  

cdf.pval  Man page Source code 
find_hits  Man page Source code 
mad.scores  Man page Source code 
rm.outliers  Man page Source code 
Files  

MD5
 
R
 
R/rm.outliers.R  
R/mad.scores.R  
R/find_hits.R  
R/cdf.pval.R  
NAMESPACE
 
man
 
man/rm.outliers.Rd  
man/mad.scores.Rd  
man/find_hits.Rd  
man/cdf.pval.Rd  
DESCRIPTION

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