MInt: Learn Direct Interaction Networks

Learns direct microbe-microbe interaction networks using a Poisson multivariate-normal hierarchical model with an L1 penalized precision matrix. Optimization is carried out using an iterative conditional modes algorithm.

AuthorSurojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic
Date of publication2015-05-18 00:57:24
MaintainerSurojit Biswas <surojitbiswas@g.harvard.edu>
LicenseGPL-2
Version1.0.1

View on CRAN

Files in this package

MInt
MInt/inst
MInt/inst/extdata
MInt/inst/extdata/P_true.txt
MInt/inst/extdata/w_true.txt
MInt/inst/extdata/b_true.txt
MInt/inst/extdata/generate_test_data.m
MInt/inst/extdata/x.txt
MInt/inst/extdata/y.txt
MInt/inst/doc
MInt/inst/doc/MInt.Rmd
MInt/inst/doc/MInt.html
MInt/inst/doc/MInt.R
MInt/tests
MInt/tests/testthat.R
MInt/tests/testthat
MInt/tests/testthat/Rplots.pdf
MInt/tests/testthat/test-read_data.R
MInt/tests/testthat/run_tests.R
MInt/tests/testthat/test-initialize_beta.R
MInt/tests/testthat/test-update_w.R
MInt/tests/testthat/test-update_beta.R
MInt/tests/testthat/test-xb.R
MInt/NAMESPACE
MInt/R
MInt/R/MInt.R
MInt/vignettes
MInt/vignettes/MInt.Rmd
MInt/MD5
MInt/build
MInt/build/vignette.rds
MInt/DESCRIPTION
MInt/man
MInt/man/bootstrap.Rd MInt/man/mint.Rd MInt/man/estimate.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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