GSE36594Expr: Normalized gene expression data for Mouse MB samples (from...

In MM2Sdata: Gene Expression Datasets for the 'MM2S' Package

Description

Gene expression for 20 GTML Medulloblastoma mouse samples, normalized using expresso and BrainArray CDFs (see references for details).

PLEASE NOTE: The full processed GSE36594 dataset, which contains 56 samples, can be accessed from the following locations: https://github.com/DGendoo/MM2Sdata http://www.pmgenomics.ca/bhklab/software/mm2s

Usage

data(GSE36594Expr)

Value

Data and annotations are organized in a ExpressionSet of the package Biobase.

pData	phenoData containing mouse sample genotype and origin
exprs	ExpressionSet with 23783 EntrezIds and 20 samples
fData	List of 23783 EntrezIds

Source

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36594

References

Gendoo, D. M., Smirnov, P., Lupien, M. & Haibe-Kains, B. Personalized diagnosis of medulloblastoma subtypes across patients and model systems. Genomics, doi:10.1016/j.ygeno.2015.05.002 (2015)

Manuscript URL: http://www.sciencedirect.com/science/article/pii/S0888754315000774

Examples

data(GSE36594Expr)

# To install from github, please run the following commands in your R terminal:
# library(Biobase)
# library(devtools)
# install_github(repo="DGendoo/MM2Sdata")
# data(GSE36594Expr)

MM2Sdata documentation built on May 2, 2019, 5:54 a.m.