test_metag: (Data) Normalized gene family abundances for MMINP prediction
In MMINP: Microbe-Metabolite Interactions-Based Metabolic Profiles Predictor
test_metag R Documentation
(Data) Normalized gene family abundances for MMINP prediction
Description
This datasets were built from NLIBD dataset (Franzosa et al., 2019) by
converting original UniRef90 IDs into KEGG Orthology (KO) IDs and removing
unassigned and repeated features.
Format
A data frame of gene family relative abundances (i.e. proportion),
with 65 subjects in rows and 629 KEGG Orthology (KO) IDs in columns.
References
Franzosa EA et al. (2019). Gut microbiome structure and metabolic
activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.
Examples
data(test_metag)
MMINP documentation built on July 5, 2022, 1:08 a.m.
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| test_metag | R Documentation |
(Data) Normalized gene family abundances for MMINP prediction
Description
This datasets were built from NLIBD dataset (Franzosa et al., 2019) by converting original UniRef90 IDs into KEGG Orthology (KO) IDs and removing unassigned and repeated features.
Format
A data frame of gene family relative abundances (i.e. proportion), with 65 subjects in rows and 629 KEGG Orthology (KO) IDs in columns.
References
Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.
Examples
data(test_metag)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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