criteria.GD | R Documentation |
This function evaluates the Generalised Ds-criterion \insertCiteGoos2005modelMOODE for given primary and potential model matrices.
criteria.GD(X1, X2, search.object, eps = 1e-23)
X1 |
The primary model matrix, with the first column containing the labels of treatments, and the second – the intercept term. |
X2 |
The matrix of potential terms, with the first column containing the labels of treatments. |
search.object |
Object of class |
eps |
Computational tolerance, the default value is 10^-23 |
A list of values: indicator of whether the evaluation was successful ("eval"), Ds-criterion value – intercept excluded ("Ds"), Lack-of-fit criterion value ("LoF"), the bias component value ("bias"), the number of pure error degrees of freedom ("df") and the value of the compound criterion ("compound").
#Experiment: one 5-level factor, primary model -- full quadratic, one potential (cubic) term
# setting up the example
ex.mood <- mood(K = 1, Levels = 5, Nruns = 7, criterion.choice = "GDP",
kappa = list(kappa.Ds = 1./3, kappa.LoF = 1./3, kappa.bias = 1./3),
model_terms = list(primary.model = "second_order", potential.model = "cubic_terms"))
# Generating candidate set: orthonormalised
K <- ex.mood$K
Levels <- ex.mood$Levels
cand.not.orth <- candidate_set_full(candidate_trt_set(Levels, K), K)
cand.full.orth <- candidate_set_orth(cand.not.orth, ex.mood$primary.terms, ex.mood$potential.terms)
# Choosing a design
index <- c(rep(1, 2), 3, 4, rep(5, 3))
X.primary <- cand.full.orth[index, c(1, match(ex.mood$primary.terms, colnames(cand.full.orth)))]
X.potential <- cand.full.orth[index,
(c(1, match(ex.mood$potential.terms, colnames(cand.full.orth))))]
# Evaluating a compound GD-criterion
criteria.GD(X1 = X.primary, X2 = X.potential, ex.mood)
# Output: eval = 1, Ds = 0.7334291, LoF = 0.7212544, bias = 1.473138, df = 3, compound = 0.9202307
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.