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R/MQMF.r
#' @importFrom grDevices dev.new dev.cur dev.off png palette
#' @importFrom graphics lines mtext par plot points grid title abline
#' @importFrom graphics arrows axis legend polygon segments layout text
#' @importFrom graphics contour hist
#' @importFrom stats qnorm rnorm dnorm runif sd quantile optim loess
#' @importFrom stats dmultinom anova ccf lm median nlm dchisq qchisq dlnorm
#' @importFrom stats pnorm cor
#' @importFrom utils tail head
#' @importFrom MASS kde2d
#' @importFrom mvtnorm rmvnorm
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#' @title MQMF functions for Using R for Modelling and Quantitative Methods in Fisheries
#'
#' @description The MQMF package Provides functions for use with the book
#' (\emph{Using R for Modelling and Quantitative Methods in Fisheries}),
#' being published by CRC Press / Chapman & Hall in
#' their (\emph{Using R}) series. Although no vignettes are included
#' all examples from the chapters are included as help pages for functions.
#' Try ?chapter2, ?chapter3, ..., or ?chapter7, which will provide a listing
#' of all the code chunks included in the book (and some that are not).
#' To see a listing of all the help files, scroll to the bottom of any help
#' screen and click the link, and an ordered listing of all visible
#' functions will be shown. A development version of MQMF is available on
#' GitHub at https://github.com/haddonm/MQMF.
#'
#' @references Haddon, M. (2021) Using R for Modelling and Quantitative
#' Methods in Fisheries, CRC Press / Chapman & Hall/ Boca Raton 337p.
#' ISBN: 9780367469894.
#'
#' Haddon, M. (2023) https://haddonm.github.io/URMQMF A GitBook version
#'
#'
#' @section Data sets:
#' \describe{
#' \item{abdat}{ a 3 column data.frame of blacklip abalone fishery data}
#' \item{blackisland}{ tagging data for growth of Black Island abalone}
#' \item{dataspm}{ a data.frame of fisheries catch and cpue data}
#' \item{LatA}{ simulated length-at-age for 358 female fish}
#' \item{minnow}{ weekly growth data for use with seasonal growth curves}
#' \item{npf}{ fishery catch data from the Northern Prawn Fishery 1970-1992}
#' \item{pttuna}{ yellowfin tunafishery data from Pella-Tomlinson 1969}
#' \item{schaef}{ yellowfin tuna fishery data from Schaefer 1957}
#' \item{tasab}{ a matrix of abalone maturity-at-length data}
#' \item{tigers}{ tiger prawn recruitment data from Penn and Caputi 1986}
#' \item{twoindex}{ orange roughy catches with hypothetical cpue}
#' }
#' @docType package
#' @name MQMF
#' @keywords internal
"_PACKAGE"
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