AdjustMatrix | Adjust the columns of the input matrix same as in the... |
aSHD | Adjusted structural hamming distance (aSHD) |
CompareMethodsNodeOrdering | Comparison of inference accuracy using the same data but with... |
CompareMethodsVStructure | Comparison of inference accuracy of different methods on data... |
CutModules | Cut a numeric variable into intervals |
data_examples | Example data under simple and complex models |
Data_GEUVADIS | GEUVADIS data with 62 eQTL-gene sets |
data_GEUVADIS_combined | Combined genotype and gene expression data from 62 eQTL-gene... |
data_with_outliers | Example data with outliers |
data_without_outliers | Example data without outliers |
EdgeOrientation | Perform edge orientation under the MRPC algorithm |
empty | Check empty matrix |
IdentifyAssociatedPCs | Identifyprincipal components (PCs) that are significantly... |
ModiSkeleton | Infer a graph skeleton (undirected graph) |
mpinv | Calculate the inverse matrix |
MRPC | Infer a causal network using the MRPC algorithm |
MRPCclass | Class of MRPC algorithm results |
MRPCtruth | Graphs used as truth in simulation |
PlotDendrogram | Plot a dendrogram and display node groups in colored modules |
PlotGraphWithModules | Plot a graph with nodes in modules indicated by colors |
RecallPrecision | Calculate recall and precision for two graphs |
RobustCor | Calculate robust correlation matrix |
seqDiff | Deviation between two graphs represented by two sequences |
SeqFDR | Sequential FDR |
simu_data_layered | Data for the layered model |
simu_data_M0 | Data for Model 0 |
simu_data_M1 | Data for Model 1 |
simu_data_M2 | Data for Model 2 |
simu_data_M3 | Data for Model 3 |
simu_data_M4 | Data for Model 4 |
simu_data_multiparent | Data for the multiple-parent model |
simu_data_starshaped | Data for the star model |
SimulateData | Simulate data under certain graphs |
SimulateData1P | Simulate data for a node with one parent |
SimulateData2P | Simulate data for a node with two parents |
SimulateData3P | Simulate data for a node with three parents |
SimulateDataNP | Simulate data for a node with no parent |
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