get_embed_usage"

In MUGS: Multisource Graph Synthesis with EHR Data

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Introduction

The get_embed function retrieves embeddings based on provided input data. This vignette demonstrates the usage of the get_embed function with example datasets included in the MUGS package.

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Load the Required Library

Ensure the MUGS package is loaded before running the example:

library(MUGS)

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Load Example Data

Load the example datasets for the get_embed function:

set.seed(1)
S <- matrix(rnorm(100^2), 100, 100)
library(rsvd)
svd <- rsvd(S, 20)

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Run the get_embed Function

Run the get_embed function to extract embeddings from the data:

# Example usage of get_embed
U <- get_embed(svd, d=10, normalize=TRUE)

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Examine the Output

Explore the structure and key components of the output:

# View the structure of the output
str(U)

# Display the first few rows of the results
cat("\nEmbedding Results (first 5 rows):\n")
print(head(U, 5))

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Notes

1. Input Data: Ensure that U.1 and S.1 are properly formatted matrices or data frames.
2. Output Structure: The output contains embeddings derived from the input data, which can be used in downstream analysis.

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Summary

This vignette demonstrated the use of the get_embed function to retrieve embeddings from input data. Use this function to process your data and extract meaningful embeddings for further applications.

MUGS documentation built on June 8, 2025, 12:35 p.m.