API for Mangrove
Risk Prediction on Trees
| Global functions | |
|---|---|
| .addNode | Source code |
| .addPed | Source code |
| .addRoot | Source code |
| .calcAlpha | Source code |
| .calcBeta | Source code |
| .calcLikelihoods | Source code |
| .calcParams | Source code |
| .calcPost | Source code |
| .getCoupleLikelihood | Source code |
| .getData | Source code |
| .getLikelihood | Source code |
| .getMaxDepth | Source code |
| .getNNodes | Source code |
| .getNinds | Source code |
| .getOffspring | Source code |
| .getPrevs | Source code |
| .getRoot | Source code |
| .getSingleLikelihood | Source code |
| .getTrans | Source code |
| .getVarExp_loci | Source code |
| .printSummary | Source code |
| .printTree | Source code |
| .sampleCases | Source code |
| .sampleVariant | Source code |
| .sampleVariants | Source code |
| Mangrove | Man page |
| Mangrove-package | Man page |
| MangroveBetas | Man page |
| MangroveContPreds | Man page |
| MangroveExamples | Man page |
| MangroveORs | Man page |
| MangrovePed | Man page |
| MangroveRiskPreds | Man page |
| MangroveSample | Man page |
| MangroveTree | Man page |
| addPed | Man page |
| applyBetas | Man page Source code |
| applyORs | Man page Source code |
| calcBetas | Man page Source code |
| calcORs | Man page Source code |
| ccped | Man page |
| contped | Man page |
| exampleBetas | Man page |
| exampleORs | Man page |
| famped | Man page |
| getPrevs | Man page |
| getVarExp | Man page Source code |
| getVarExpSim | Man page Source code |
| initialiseTree | Man page Source code |
| mendT | Man page |
| plot.MangroveBetas | Man page Source code |
| plot.MangroveContPreds | Man page Source code |
| plot.MangroveORs | Man page Source code |
| plot.MangrovePed | Man page Source code |
| plot.MangroveRiskPreds | Man page Source code |
| plot.MangroveSample | Man page Source code |
| plot.MangroveTree | Man page Source code |
| plotNaivePrev | Man page Source code |
| plotSampledPrev | Man page Source code |
| print.MangroveBetas | Man page Source code |
| print.MangroveContPreds | Man page Source code |
| print.MangroveORs | Man page Source code |
| print.MangrovePed | Man page Source code |
| print.MangroveRiskPreds | Man page Source code |
| print.MangroveSample | Man page Source code |
| print.MangroveTree | Man page Source code |
| readBetas | Man page Source code |
| readORs | Man page Source code |
| readPed | Man page Source code |
| summary.MangroveBetas | Man page Source code |
| summary.MangroveContPreds | Man page Source code |
| summary.MangroveORs | Man page Source code |
| summary.MangrovePed | Man page Source code |
| summary.MangroveRiskPreds | Man page Source code |
| summary.MangroveSample | Man page Source code |
| summary.MangroveTree | Man page Source code |
