Map2NCBI: Mapping Markers to the Nearest Genomic Feature
Version 1.1

Allows the user to generate a list of features (gene, pseudo, RNA, CDS, and/or UTR) directly from NCBI database for any species with a current build available. Option to save downloaded and formatted files is available, and the user can prioritize the feature list based on type and assembly builds present in the current build used. The user can then use the list of features generated or provide a list to map a set of markers (designed for SNP markers with a single base pair position available) to the closest feature based on the map build. This function does require map positions of the markers to be provided and the positions should be based on the build being queried through NCBI.

Package details

AuthorLauren L. Hulsman Hanna and David G. Riley
Date of publication2015-11-13 08:55:43
MaintainerLauren Hanna <Lauren.Hanna@ndsu.edu>
LicenseGPL (>= 2)
Version1.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("Map2NCBI")

Try the Map2NCBI package in your browser

Any scripts or data that you put into this service are public.

Map2NCBI documentation built on May 29, 2017, 3:46 p.m.