MatrixCorrelation: Matrix Correlation Coefficients

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Computation and visualization of matrix correlation coefficients. The main method is the Similarity of Matrices Index, while various related measures like r1, r2, r3, r4, Yanai's GCD, RV, RV2 and adjusted RV are included for comparison.

Author
Kristian Hovde Liland [aut, cre], Tormod Ns [ctb], Ulf Geir Indahl [ctb]
Date of publication
2016-10-12 23:52:42
Maintainer
Kristian Hovde Liland <kristian.liland@nofima.no>
License
GPL-2
Version
0.9

View on CRAN

Man pages

allCorrelations
All correlations
candy
Candy data
cor.test_eq
Test for no correlation between paired sampes
MatrixCorrelation
Similiarity of Matrices Coefficients
PCAcv
Principal Component Analysis cross-validation error
plot.SMI
Result functions for the Similarity of Matrices Index (SMI)
PSI
Procrustes Similarity Index
r1
Correlational Measures for Matrices
RV
RV coefficients
significant
Significance estimation for Similarity of Matrices Index...
SMI
Similarity of Matrices Index (SMI)

Files in this package

MatrixCorrelation
MatrixCorrelation/inst
MatrixCorrelation/inst/CITATION
MatrixCorrelation/src
MatrixCorrelation/src/Makevars
MatrixCorrelation/src/significantRepRcpp.cpp
MatrixCorrelation/src/significantRcpp.cpp
MatrixCorrelation/src/RV2cpp.cpp
MatrixCorrelation/src/Makevars.win
MatrixCorrelation/src/RcppExports.cpp
MatrixCorrelation/NAMESPACE
MatrixCorrelation/data
MatrixCorrelation/data/candy.rda
MatrixCorrelation/R
MatrixCorrelation/R/PCAcv.R
MatrixCorrelation/R/rx.R
MatrixCorrelation/R/cor.test_eq.R
MatrixCorrelation/R/candy.R
MatrixCorrelation/R/PMI.R
MatrixCorrelation/R/SMI.R
MatrixCorrelation/R/RV.R
MatrixCorrelation/R/SMI_significance.R
MatrixCorrelation/R/RcppExports.R
MatrixCorrelation/R/allCorrelations.R
MatrixCorrelation/R/SMI_results.R
MatrixCorrelation/R/MatrixCorrelation.R
MatrixCorrelation/MD5
MatrixCorrelation/DESCRIPTION
MatrixCorrelation/man
MatrixCorrelation/man/SMI.Rd
MatrixCorrelation/man/significant.Rd
MatrixCorrelation/man/allCorrelations.Rd
MatrixCorrelation/man/MatrixCorrelation.Rd
MatrixCorrelation/man/candy.Rd
MatrixCorrelation/man/RV.Rd
MatrixCorrelation/man/PSI.Rd
MatrixCorrelation/man/r1.Rd
MatrixCorrelation/man/PCAcv.Rd
MatrixCorrelation/man/cor.test_eq.Rd
MatrixCorrelation/man/plot.SMI.Rd