| calc_Lstar | Calculate adjusted chromosome length for an obligate chiasma. |
| check_geno_individual | Check genotypic representation of an individual. |
| check_positions | Check genetic positions |
| check_xo_individual | Check segmental representation of an individual. |
| check_xoparam | Check crossover parameters. |
| Converter | Converter reference class |
| Converter-cash-convert | convert |
| Converter-cash-insert_founder | insert_founder |
| create_xo_founder | Create founders with crossover-data. |
| create_xoparam | Create a parameter list for simulating crossovers. |
| cross_geno | Cross individuals (genotypic representation) |
| crossover | Simulate crossover locations. |
| cross_xo | Cross individuals (segmental representation) |
| dh_geno | Produce doubled haploid (genotypic representation) |
| dh_xo | Produce doubled haploid (segmental representation) |
| exdat | Example data |
| Meiosis | Meiosis: Simulation of meiosis in plant breeding research |
| meiosis_geno | Simulate meiosis (genotypic representation) |
| meiosis_xo | Simulate meiosis (segmental representation) |
| realized_coancestry | Compute co-ancestry |
| realized_heter | Compute realized heterozygosity. |
| restructure | Restructure genotypic data |
| seed_rng | Seed the random number generator of the C++ routines. |
| self_geno | Produce selfing (genotypic representation) |
| self_xo | Produce selfing (segmental representation) |
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