cal_sim: Calculate similarity for one t(otutab)

In MetaNet: Network Analysis for Omics Data

Calculate similarity for one t(otutab)

Description

Calculate similarity for one t(otutab)

Usage

cal_sim(totu, totu2 = NULL, method = "bray")

Arguments

totu	t(otutab), row are samples, column are features.
totu2	t(otutab) or NULL, row are samples, column are features.
method	Dissimilarity index, see vegdist.

Value

similarity = 1-distance

See Also

vegdist

Other calculate: c_net_calculate(), fast_cor(), p.adjust.table(), read_corr()

Examples

if (requireNamespace("vegan")) {
  data("otutab", package = "pcutils")
  t(otutab) -> totu
  cal_sim(totu) -> sim_corr
}

MetaNet documentation built on June 26, 2025, 5:07 p.m.