getdata: This function read the output from Methpup into R

In Methplot: Visualize the methylation patterns

Description

This function read the output from Methpup into R

Usage

getdata(filelist, n, gene)

Arguments

filelist	the directory where the output files are saved in
gene	the region that you are interested to look at the methylation profile
n	the number of CpG sites in the region that you specified in "gene".

Value

This function could yield a dataframe saying the read number detected in each methylation pattern in the given region in all samples under "filelist" directory.

Author(s)

Xin Yang [e-mail]

Examples

foxp3<-getdata(system.file("extdata", package="Methplot"), 10, "foxp3")

Methplot documentation built on May 1, 2019, 7:50 p.m.