MethylCapSig: Detection of Differentially Methylated Regions using MethylCap-Seq Data

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Provides a univariate and several high dimensional multivariate test statistics for detecting differentially methylated regions based on MethylCap-seq data.

Author
Deepak N. Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan and Shili Lin.
Date of publication
2015-08-12 20:12:51
Maintainer
Deepak N. Ayyala <ayyala.1@osu.edu>
License
LGPL-3
Version
1.0.1

View on CRAN

Man pages

cqtest
Chen-Qin test statistic
diffMethylData
Randomly generated nucleotide-resolution methylation signal...
methmage
MethMAGE test
MethylCapSig-package
Detection of differentially methylated regions using...
mvlognormal
Multivariate lognormal random variable generator.
patest
Park-Ayyala test statistic
skktest
Srivastava-Katayama-Kano test statistic
ttest
One sample and two sample t-test using total methylation...

Files in this package

MethylCapSig
MethylCapSig/NAMESPACE
MethylCapSig/data
MethylCapSig/data/diffMethylData.rda
MethylCapSig/R
MethylCapSig/R/skktest.R
MethylCapSig/R/mvlognormal.R
MethylCapSig/R/patest.R
MethylCapSig/R/methmage.R
MethylCapSig/R/cqtest.R
MethylCapSig/R/ttest.R
MethylCapSig/MD5
MethylCapSig/DESCRIPTION
MethylCapSig/man
MethylCapSig/man/patest.Rd
MethylCapSig/man/skktest.Rd
MethylCapSig/man/ttest.Rd
MethylCapSig/man/diffMethylData.Rd
MethylCapSig/man/methmage.Rd
MethylCapSig/man/mvlognormal.Rd
MethylCapSig/man/MethylCapSig-package.Rd
MethylCapSig/man/cqtest.Rd