MethylCapSig: Detection of Differentially Methylated Regions using MethylCap-Seq Data
Version 1.0.1

Provides a univariate and several high dimensional multivariate test statistics for detecting differentially methylated regions based on MethylCap-seq data.

AuthorDeepak N. Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan and Shili Lin.
Date of publication2015-08-12 20:12:51
MaintainerDeepak N. Ayyala <ayyala.1@osu.edu>
LicenseLGPL-3
Version1.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MethylCapSig")

Getting started

Package overview

Popular man pages

diffMethylData: Randomly generated nucleotide-resolution methylation signal...
methmage: MethMAGE test
MethylCapSig-package: Detection of differentially methylated regions using...
mvlognormal: Multivariate lognormal random variable generator.
patest: Park-Ayyala test statistic
skktest: Srivastava-Katayama-Kano test statistic
ttest: One sample and two sample t-test using total methylation...
See all...

All man pages Function index File listing

Man pages

cqtest: Chen-Qin test statistic
diffMethylData: Randomly generated nucleotide-resolution methylation signal...
methmage: MethMAGE test
MethylCapSig-package: Detection of differentially methylated regions using...
mvlognormal: Multivariate lognormal random variable generator.
patest: Park-Ayyala test statistic
skktest: Srivastava-Katayama-Kano test statistic
ttest: One sample and two sample t-test using total methylation...

Functions

MethylCapSig Man page
MethylCapSig-package Man page
cqtest Man page Source code
diffMethylData Man page
methmage Man page Source code
mvlognormal Man page Source code
patest Man page Source code
skktest Man page Source code
ttest Man page Source code

Files

NAMESPACE
data
data/diffMethylData.rda
R
R/skktest.R
R/mvlognormal.R
R/patest.R
R/methmage.R
R/cqtest.R
R/ttest.R
MD5
DESCRIPTION
man
man/patest.Rd
man/skktest.Rd
man/ttest.Rd
man/diffMethylData.Rd
man/methmage.Rd
man/mvlognormal.Rd
man/MethylCapSig-package.Rd
man/cqtest.Rd
MethylCapSig documentation built on May 19, 2017, 10:25 p.m.

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