Counts median of intensities for multiple probes that target one gene/transcript.
MiSummarize(Matrix, sep, method = "median")
numeric matrix of intensities data where each row corresponds to a probe (gene, transcript),
and each column correspondes to a specimen (patient).
Row names of
a character string to separate the terms in probe IDs.
character string specifying summarization method. Possible values are "median" and "mean".
This function is used for summarizing expression intensities data when multiple probes target
one gene/transcript. Row names of
Matrix should contain probe IDs that consist of 3 terms:
"Gene name - sep - transcript name - sep - probe name" (for example, "AGTR2.ALL" - for gene, only one probe;
"AGTR2.NM_000686.z1" - 1st probe to AGTR2 NM_000686 mRNA transcript).
gene/transcript expression matrix with median/mean of expression intensities for each gene/transcript.
Elena N. Filatova
1 2 3 4 5 6
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.