MiRAnorm: Adaptive Normalization for miRNA Data
Version 1.0.0

An adaptive normalization algorithm that selects housekeeping genes based on the sample level variability in the data. This is suitable for any data obtained from RT-qPCR assays. A manuscript describing the method is submitted to Genome Biology under ``MiRA-norm: An Adaptive Method for the Normalization of MicroRNA Array Data``, Yuda Zhu et al.

AuthorYuda Zhu [aut, cre], Amanda Zhao [aut]
Date of publication2016-11-03 11:33:06
MaintainerYuda Zhu <yudazhu@gmail.com>
LicenseGPL-3
Version1.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MiRAnorm")

Getting started

README.md

Popular man pages

dist.func: Calculating the distance between each row of the matrix and...
impmat: Imputation function
miranorm: Adaptive algorithm to identify normalization genes.
scr: Replacing values above ct to NA
simData: Simulating a RT-PCR miRNA dataset.
See all...

All man pages Function index File listing

Man pages

dist.func: Calculating the distance between each row of the matrix and...
impmat: Imputation function
miranorm: Adaptive algorithm to identify normalization genes.
scr: Replacing values above ct to NA
simData: Simulating a RT-PCR miRNA dataset.

Functions

agree.twosets Source code
bt.strap Source code
cluster.kappa Source code
cluster.m Source code
dist.func Man page Source code
heatmap3 Source code
impmat Man page Source code
impvalue Source code
index.pair Source code
miranorm Man page Source code
norm.benchmark Source code
norm.cluster Source code
normal.gmean Source code
normal.gmedian Source code
normal.quant Source code
normal.selected Source code
pvaluef Source code
scr Man page Source code
simData Man page Source code
trace.selection.kappa Source code

Files

NAMESPACE
NEWS
R
R/Norm_cluster.R
R/ScreeningNA.R
R/Impmat.R
R/Norm_func.R
R/Distance.R
R/Heatmap3.R
R/SimData.R
R/Clust_kappa.R
R/PValue.R
R/MiRAnorm.R
README.md
MD5
DESCRIPTION
man
man/impmat.Rd
man/miranorm.Rd
man/dist.func.Rd
man/scr.Rd
man/simData.Rd
MiRAnorm documentation built on May 19, 2017, 7:22 a.m.

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