MiRAnorm: Adaptive Normalization for miRNA Data

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An adaptive normalization algorithm that selects housekeeping genes based on the sample level variability in the data. This is suitable for any data obtained from RT-qPCR assays. A manuscript describing the method is submitted to Genome Biology under ``MiRA-norm: An Adaptive Method for the Normalization of MicroRNA Array Data``, Yuda Zhu et al.

Author
Yuda Zhu [aut, cre], Amanda Zhao [aut]
Date of publication
2016-11-03 11:33:06
Maintainer
Yuda Zhu <yudazhu@gmail.com>
License
GPL-3
Version
1.0.0

View on CRAN

Man pages

dist.func
Calculating the distance between each row of the matrix and...
impmat
Imputation function
miranorm
Adaptive algorithm to identify normalization genes.
scr
Replacing values above ct to NA
simData
Simulating a RT-PCR miRNA dataset.

Files in this package

MiRAnorm
MiRAnorm/NAMESPACE
MiRAnorm/NEWS
MiRAnorm/R
MiRAnorm/R/Norm_cluster.R
MiRAnorm/R/ScreeningNA.R
MiRAnorm/R/Impmat.R
MiRAnorm/R/Norm_func.R
MiRAnorm/R/Distance.R
MiRAnorm/R/Heatmap3.R
MiRAnorm/R/SimData.R
MiRAnorm/R/Clust_kappa.R
MiRAnorm/R/PValue.R
MiRAnorm/R/MiRAnorm.R
MiRAnorm/README.md
MiRAnorm/MD5
MiRAnorm/DESCRIPTION
MiRAnorm/man
MiRAnorm/man/impmat.Rd
MiRAnorm/man/miranorm.Rd
MiRAnorm/man/dist.func.Rd
MiRAnorm/man/scr.Rd
MiRAnorm/man/simData.Rd