NEWS.md

In MicroMoB: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission

MicroMoB 0.1.2

• skip plumber API tests on CRAN due to occasional failures out of developer control.

MicroMoB 0.1.1

• coerce initial state to integer type in setup_humans_SIP()
• add getters and setters for parameters for mosquito RM, aquatic BH, and aquatic trace models.

MicroMoB 0.1.0

• adds ability to model larval breeding pools separately from patches
• adds human SIP (Susceptible-Infected-Protected) model
• adds prevalence sampling with test sens/spec observe_pfpr()
• adds simple bloodmeal computation compute_bloodmeal_simple()
• significantly simplifies step_mosquitoes.RM_stochastic()
• update vignettes with better use of data.table and discrete time equilibrium calculations

MicroMoB 0.0.12

• move plumber dependency to "Suggests" to avoid NOTE in checks.
• fix bug in step_mosquitoes.RM_deterministic where mortality applied to incubating mosquitoes would not correctly be dependent on patch.
• use plumber:::findPort() in test of plumber API

MicroMoB 0.0.11

• add behavioral state model of adult mosquito dynamics.

MicroMoB 0.0.10

• add functions to each model allowing parameters to be read in from specially formatted JSON files
• add inst/extdata folder with JSON files for testing config
• add jsonlite package to Imports for JSON config capability
• add plumber package to Imports to expose a web API
• add inst/plumber/ subfolders to store Plumber APIs
• add callr package to Suggests for testing API
• add httr package to Suggests for testing API
• add callr package to Suggests for using CSV serialization to return simulation output from API
• p parameter for RM adult mosquito model is now allowed to be patch and time varying
• add new vignette "Advanced topics" describing how to extend the package and the Plumber web API.
• add withr package to Suggests to clean up after testing API.

MicroMoB 0.0.9

• add information on return value to all function documentation
• reset par options in vignettes
• improve diagrams in vignettes

MicroMoB 0.0.8

• add SIR model of human infection.

MicroMoB 0.0.7

• fix moved URL in README.md as per CRAN request.

MicroMoB 0.0.6

• improve all vignettes and documentation for clarity.
• fix DESCRIPTION according to CRAN checks.

MicroMoB 0.0.5

• higher quality graphics (https://github.com/dd-harp/MicroMoB/issues/47)
• bloodmeal directed wiring diagram (https://github.com/dd-harp/MicroMoB/issues/41)

MicroMoB 0.0.4

• faster multinomial draws, using the algorithm presented in "An asymptotically optimal, online algorithm for weighted random sampling with replacement"

MicroMoB 0.0.3

• add Code of Conduct
• improvements to vignettes (bloodmeal.Rmd and MicroMoB.Rmd)
• improvements to function reference page

MicroMoB 0.0.2

• initial release of minimum viable product: https://github.com/dd-harp/MicroMoB/issues/28

MicroMoB documentation built on Jan. 17, 2023, 9:06 a.m.