get_config_humans_MOI | R Documentation |
The JSON config file should have 9 entries:
stochastic: a boolean value
theta: matrix (row major)
wf: vector
H: vector
MOI: matrix (row major)
b: scalar
c: scalar
r: scalar
sigma: scalar
For interpretation of the entries, please read setup_humans_MOI.
get_config_humans_MOI(path)
path |
a file path to a JSON file |
a named list
# to see an example of proper JSON input, run the following library(jsonlite) n <- 6 # number of human population strata p <- 5 # number of patches theta <- matrix(rexp(n*p), nrow = n, ncol = p) theta <- theta / rowSums(theta) H <- rep(10, n) MOI <- matrix(0, nrow = 10, ncol = n) MOI[1, ] <- H par <- list( "stochastic" = FALSE, "theta" = theta, "wf" = rep(1, n), "H" = H, "MOI" = MOI, "b" = 0.55, "c" = 0.15, "r" = 1/200, "sigma" = 1 ) toJSON(par, pretty = TRUE)
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