setup_humans_SIR: Setup humans with SIR infection model

In MicroMoB: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission

Setup humans with SIR infection model

Description

A simple SIR (Susceptible-Infected-Recovered) model

Usage

setup_humans_SIR(
  model,
  stochastic,
  theta,
  wf = NULL,
  H,
  SIR,
  b = 0.55,
  c = 0.15,
  gamma = 1/5
)

Arguments

model	an object from make_MicroMoB
stochastic	should the model update deterministically or stochastically?
theta	a time spent matrix
wf	biting weights
H	vector of strata population sizes
SIR	a matrix giving S, I, R counts (columns) for each strata (rows)
b	transmission efficiency (mosquito to human)
c	transmission efficiency (human to mosquito)
gamma	rate of recovery

Value

no return value

MicroMoB documentation built on Jan. 17, 2023, 9:06 a.m.