setup_mosquito_RM: Setup generalized Ross-Macdonald mosquito model

In MicroMoB: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission

Setup generalized Ross-Macdonald mosquito model

Description

This is a generalized RM model which allows for time varying EIP and survival probability. It complies with the mosquito component interface, and may be simulated deterministically or stochastically.

Usage

setup_mosquito_RM(
  model,
  stochastic,
  f = 0.3,
  q = 0.9,
  eip,
  p,
  psi,
  nu = 25,
  M,
  Y,
  Z,
  N = NULL
)

Arguments

model	an object from make_MicroMoB
stochastic	should the model update deterministically or stochastically?
f	the blood feeding rate
q	the human blood feeding fraction
eip	the Extrinsic Incubation Period (may be time varying see time_varying_parameter)
p	daily survival probability (may be time and patch varying see time_patch_varying_parameter)
psi	a mosquito dispersal matrix (rows must sum to 1)
nu	number of eggs laid per oviposition
M	total mosquito density per patch (vector of length p)
Y	density of incubating mosquitoes per patch (vector of length p)
Z	density of infectious mosquitoes per patch (vector of length p)
N	l by p matrix describing how eggs from mosquitoes in patches are distributed amongst aquatic habitats. If NULL it is the identity matrix of dimension l.

Value

no return value

MicroMoB documentation built on Jan. 17, 2023, 9:06 a.m.