MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.

Package details

AuthorOrlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb]
MaintainerOrlando Schwery <schwery.macroevo@pm.me>
LicenseGPL-3
Version1.3.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("MonoPhy")

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MonoPhy documentation built on May 29, 2024, 6:01 a.m.